Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11660

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
2,218,948	+				-1.2
2,219,024	+				-1.1
2,219,050	+				+2.7
2,219,060	+				-0.2
2,219,060	+				-0.9
2,219,061	-				-0.2
2,219,061	-				+1.0
2,219,061	-				+1.8
2,219,061	-				-0.5
2,219,088	-		LU632_RS11660	0.19	-0.1
2,219,120	-		LU632_RS11660	0.42	+0.7
2,219,135	-		LU632_RS11660	0.52	+1.0
2,219,187	+		LU632_RS11660	0.89	-2.8
2,219,188	-				-0.5
2,219,191	+				+1.1
2,219,191	+				+0.5
2,219,191	+				+0.3
2,219,192	-				+0.4
2,219,207	+				-0.9
2,219,208	-				-0.7
2,219,208	-				+0.5
2,219,414	-				-1.4
2,219,414	-				+0.5
2,219,458	+				-0.9
2,219,539	+	rhaM	LU632_RS11670	0.14	-0.7
2,219,561	-	rhaM	LU632_RS11670	0.21	-0.0
2,219,561	-	rhaM	LU632_RS11670	0.21	+0.2
2,219,688	+	rhaM	LU632_RS11670	0.61	+1.6
2,219,757	+	rhaM	LU632_RS11670	0.83	+2.7
2,219,809	+				-1.3
2,219,809	+				+1.1
2,219,810	-				-0.3
2,219,810	-				-0.7
2,219,812	-				+0.8
2,219,891	+	rhaD	LU632_RS11675	0.11	+1.5
2,219,960	+	rhaD	LU632_RS11675	0.19	-0.9
2,220,188	-	rhaD	LU632_RS11675	0.46	+1.9