Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11215

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
2,145,126	+				-0.2
2,145,138	-				-3.1
2,145,138	-				+1.1
2,145,192	-				+1.3
2,145,330	+				-0.4
2,145,330	+				-1.4
2,145,331	-				-0.7
2,145,331	-				+0.1
2,145,331	-				-0.3
2,145,400	-				+2.4
2,145,426	+				+2.3
2,145,477	+		LU632_RS11210	0.23	-1.4
2,145,477	+		LU632_RS11210	0.23	+0.4
2,145,477	+		LU632_RS11210	0.23	-0.8
2,145,477	+		LU632_RS11210	0.23	+1.4
2,145,545	+		LU632_RS11210	0.50	+0.2
2,145,633	-		LU632_RS11210	0.86	+1.2
2,145,662	+				-0.3
2,145,663	-				+0.0
2,145,667	-				+1.5
2,145,742	-				+0.6
2,145,754	-				-1.2
2,145,817	+				-1.0
2,145,908	+				+0.1
2,145,909	-				+1.3
2,145,917	+				+0.2
2,145,976	+				-0.1
2,146,334	-				+0.0
2,146,355	-				+0.1
2,146,447	-				+0.5
2,146,466	+				+1.3
2,146,466	+				+1.8
2,146,466	+				+1.0
2,146,467	-				+0.2
2,146,467	-				-1.4
2,146,467	-				+1.7
2,146,576	+				-0.0
2,146,577	-				+0.6
2,146,598	+				+1.9
2,146,726	+	rnt	LU632_RS11220	0.14	-0.0
2,146,811	+	rnt	LU632_RS11220	0.27	-2.2
2,146,812	-	rnt	LU632_RS11220	0.27	-0.3
2,146,812	-	rnt	LU632_RS11220	0.27	-0.9
2,146,812	-	rnt	LU632_RS11220	0.27	+1.3
2,146,990	+	rnt	LU632_RS11220	0.55	+0.1
2,146,990	+	rnt	LU632_RS11220	0.55	-1.9
2,146,990	+	rnt	LU632_RS11220	0.55	+0.1
2,146,991	-	rnt	LU632_RS11220	0.55	-1.1
2,146,991	-	rnt	LU632_RS11220	0.55	-0.1
2,146,991	-	rnt	LU632_RS11220	0.55	+2.9
2,146,991	-	rnt	LU632_RS11220	0.55	+0.1
2,147,015	+	rnt	LU632_RS11220	0.59	+1.6
2,147,028	-	rnt	LU632_RS11220	0.61	+0.1
2,147,036	-	rnt	LU632_RS11220	0.62	-0.4
2,147,075	+	rnt	LU632_RS11220	0.68	-0.2