Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10000

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,911,650	+				-0.9
1,911,651	-				-0.7
1,911,909	-				-0.3
1,912,522	-				+0.4
1,912,539	-				+0.3
1,912,544	-				+0.5
1,912,657	-				+0.7
1,912,661	+				+1.1
1,912,662	-				-0.7
1,912,688	+				+0.0
1,912,747	-				+0.9
1,912,747	-				+1.0
1,912,747	-				+0.7
1,912,749	-		LU632_RS10000	0.10	+0.7
1,912,791	+		LU632_RS10000	0.12	-0.1
1,912,806	+		LU632_RS10000	0.13	-1.9
1,912,807	-		LU632_RS10000	0.13	-0.3
1,912,807	-		LU632_RS10000	0.13	+2.7
1,912,807	-		LU632_RS10000	0.13	-1.3
1,912,807	-		LU632_RS10000	0.13	+1.0
1,912,807	-		LU632_RS10000	0.13	-0.1
1,912,808	+		LU632_RS10000	0.13	+2.0
1,912,851	-		LU632_RS10000	0.16	+3.7
1,912,859	+		LU632_RS10000	0.16	+0.1
1,912,859	+		LU632_RS10000	0.16	-0.2
1,912,860	-		LU632_RS10000	0.16	+0.7
1,912,863	+		LU632_RS10000	0.16	-2.5
1,912,864	-		LU632_RS10000	0.16	+0.2
1,912,864	-		LU632_RS10000	0.16	-0.5
1,912,864	-		LU632_RS10000	0.16	+0.0
1,912,864	-		LU632_RS10000	0.16	-0.5
1,912,864	-		LU632_RS10000	0.16	-1.3
1,912,864	-		LU632_RS10000	0.16	+1.6
1,912,866	-		LU632_RS10000	0.17	+0.6
1,912,929	+		LU632_RS10000	0.20	-0.2
1,912,930	-		LU632_RS10000	0.20	+0.0
1,912,943	+		LU632_RS10000	0.21	-1.3
1,912,943	+		LU632_RS10000	0.21	+1.1
1,913,025	+		LU632_RS10000	0.25	-0.5
1,913,025	+		LU632_RS10000	0.25	-0.3
1,913,139	-		LU632_RS10000	0.32	-0.7
1,913,139	-		LU632_RS10000	0.32	+0.3
1,913,175	-		LU632_RS10000	0.34	+0.8
1,913,175	-		LU632_RS10000	0.34	+1.3
1,913,319	+		LU632_RS10000	0.42	-1.7
1,913,323	-		LU632_RS10000	0.42	+0.1
1,913,323	-		LU632_RS10000	0.42	+2.4
1,913,451	+		LU632_RS10000	0.49	+1.3
1,913,492	+		LU632_RS10000	0.51	-0.3
1,913,492	+		LU632_RS10000	0.51	-1.3
1,913,492	+		LU632_RS10000	0.51	-2.2
1,913,492	+		LU632_RS10000	0.51	+3.3
1,913,492	+		LU632_RS10000	0.51	+2.3
1,913,492	+		LU632_RS10000	0.51	-0.3
1,913,493	-		LU632_RS10000	0.51	+1.1
1,913,493	-		LU632_RS10000	0.51	-1.1
1,913,493	-		LU632_RS10000	0.51	+4.1
1,913,493	-		LU632_RS10000	0.51	+1.3
1,913,494	+		LU632_RS10000	0.51	+0.0
1,913,547	+		LU632_RS10000	0.54	-0.3
1,913,547	+		LU632_RS10000	0.54	+1.1
1,913,548	-		LU632_RS10000	0.54	+1.5
1,913,613	+		LU632_RS10000	0.58	-0.3
1,913,614	-		LU632_RS10000	0.58	+2.1
1,913,614	-		LU632_RS10000	0.58	+1.0
1,913,624	+		LU632_RS10000	0.59	-0.7
1,913,712	+		LU632_RS10000	0.64	+1.8
1,913,712	+		LU632_RS10000	0.64	-1.1
1,913,712	+		LU632_RS10000	0.64	+0.8
1,913,791	+		LU632_RS10000	0.68	-0.2
1,913,791	+		LU632_RS10000	0.68	+1.0
1,913,792	-		LU632_RS10000	0.68	-0.1
1,913,792	-		LU632_RS10000	0.68	+0.4
1,913,841	+		LU632_RS10000	0.71	+0.7
1,913,889	+		LU632_RS10000	0.73	-1.3
1,913,909	+		LU632_RS10000	0.74	-1.1
1,913,910	-		LU632_RS10000	0.74	-1.7
1,913,910	-		LU632_RS10000	0.74	-0.7
1,913,932	-		LU632_RS10000	0.76	+0.3
1,914,044	+		LU632_RS10000	0.82	+0.0
1,914,045	-		LU632_RS10000	0.82	+0.4
1,914,080	+		LU632_RS10000	0.84	-0.1
1,914,123	+		LU632_RS10000	0.86	-1.3
1,914,139	+		LU632_RS10000	0.87	-0.1
1,914,140	+		LU632_RS10000	0.87	-0.9
1,914,140	+		LU632_RS10000	0.87	+0.3
1,914,141	-		LU632_RS10000	0.87	+0.9
1,914,141	-		LU632_RS10000	0.87	-0.1
1,914,141	-		LU632_RS10000	0.87	+2.3
1,914,280	-				-1.1
1,914,281	+				-0.4
1,914,281	+				-1.2
1,914,282	-				-0.1
1,914,282	-				+1.7
1,914,282	-				+0.3
1,914,324	-				+1.9
1,914,372	-				+1.0
1,914,389	+				+4.9
1,914,409	-				+0.8
1,914,409	-				+0.8
1,914,559	+	matP	LU632_RS10005	0.10	-1.5
1,914,559	+	matP	LU632_RS10005	0.10	+0.2
1,914,560	-	matP	LU632_RS10005	0.10	+0.2
1,914,602	-	matP	LU632_RS10005	0.19	+4.0
1,914,602	-	matP	LU632_RS10005	0.19	+0.7
1,914,633	-	matP	LU632_RS10005	0.26	-0.9
1,914,809	+	matP	LU632_RS10005	0.62	-0.3
1,914,809	+	matP	LU632_RS10005	0.62	-0.7
1,914,810	-	matP	LU632_RS10005	0.63	+0.3
1,914,810	-	matP	LU632_RS10005	0.63	-1.1
1,914,846	+	matP	LU632_RS10005	0.70	+1.7
1,914,846	+	matP	LU632_RS10005	0.70	-0.3
1,914,847	-	matP	LU632_RS10005	0.70	+0.1
1,914,866	+	matP	LU632_RS10005	0.74	-0.7
1,914,876	-	matP	LU632_RS10005	0.77	-2.2
1,914,939	-	matP	LU632_RS10005	0.90	-1.5
1,914,950	+				+0.1
1,914,951	-				-1.9
1,915,007	+				-0.6
1,915,023	-				-0.6
1,915,087	+				-0.4
1,915,149	+				+1.4
1,915,151	+				-1.5
1,915,152	-				-1.1
1,915,154	+				-0.3