Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09755

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,851,251	+				+3.6
1,852,088	+				+0.1
1,852,140	+				+0.7
1,852,141	-				-0.3
1,852,141	-				+0.1
1,852,141	-				+1.3
1,852,141	-				-0.3
1,852,141	-				+0.3
1,852,141	-				-1.3
1,852,142	+				+0.5
1,852,244	+				-0.5
1,852,265	+		LU632_RS09755	0.12	-0.7
1,852,265	+		LU632_RS09755	0.12	-0.5
1,852,266	-		LU632_RS09755	0.12	-0.9
1,852,266	-		LU632_RS09755	0.12	-1.9
1,852,275	+		LU632_RS09755	0.12	-0.2
1,852,275	+		LU632_RS09755	0.12	+0.3
1,852,282	-		LU632_RS09755	0.13	+0.6
1,852,310	+		LU632_RS09755	0.15	-1.5
1,852,402	+		LU632_RS09755	0.22	-0.2
1,852,403	-		LU632_RS09755	0.22	-0.3
1,852,403	-		LU632_RS09755	0.22	-0.7
1,852,463	+		LU632_RS09755	0.27	-0.7
1,852,464	-		LU632_RS09755	0.27	-0.8
1,852,464	-		LU632_RS09755	0.27	+0.4
1,852,612	-		LU632_RS09755	0.38	+0.9
1,852,791	-		LU632_RS09755	0.52	+1.3
1,852,791	-		LU632_RS09755	0.52	+0.5
1,852,824	+		LU632_RS09755	0.55	-1.4
1,852,847	+		LU632_RS09755	0.57	-0.7
1,852,848	-		LU632_RS09755	0.57	+0.7
1,852,848	-		LU632_RS09755	0.57	+0.7
1,852,883	-		LU632_RS09755	0.59	-0.0
1,852,901	+		LU632_RS09755	0.61	-2.6
1,852,902	-		LU632_RS09755	0.61	-0.2
1,852,926	+		LU632_RS09755	0.63	+3.3
1,852,927	-		LU632_RS09755	0.63	+1.4
1,852,927	-		LU632_RS09755	0.63	+0.3
1,852,950	-		LU632_RS09755	0.65	+1.9
1,852,988	+		LU632_RS09755	0.68	+0.9
1,853,069	+		LU632_RS09755	0.74	-0.3
1,853,069	+		LU632_RS09755	0.74	-1.8
1,853,074	-		LU632_RS09755	0.74	+0.1
1,853,154	+		LU632_RS09755	0.80	-0.5
1,853,155	-		LU632_RS09755	0.81	-1.0
1,853,302	-				-1.5
1,853,304	+				+0.2
1,853,379	-				+0.2
1,853,399	+				-1.0
1,853,403	+				+2.3
1,853,403	+				-1.3
1,853,453	+				+0.5
1,853,453	+				-1.1
1,853,453	+				-1.0
1,853,453	+				+2.1
1,853,457	+				+0.2
1,853,457	+				+0.7
1,853,468	+				-1.9
1,853,468	+				+0.6