Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09375

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,773,855	+		LU632_RS09370	0.22	-1.1
1,773,856	-		LU632_RS09370	0.22	-0.7
1,773,856	-		LU632_RS09370	0.22	-1.0
1,773,910	-		LU632_RS09370	0.26	+0.3
1,774,087	+		LU632_RS09370	0.40	+0.1
1,774,088	-		LU632_RS09370	0.40	+1.7
1,774,187	-		LU632_RS09370	0.48	-0.7
1,774,204	+		LU632_RS09370	0.49	+0.7
1,774,204	+		LU632_RS09370	0.49	-1.3
1,774,205	-		LU632_RS09370	0.49	-1.3
1,774,206	+		LU632_RS09370	0.49	-0.4
1,774,206	+		LU632_RS09370	0.49	+1.0
1,774,233	+		LU632_RS09370	0.51	+0.9
1,774,234	-		LU632_RS09370	0.52	-0.5
1,774,234	-		LU632_RS09370	0.52	+0.3
1,774,234	-		LU632_RS09370	0.52	-1.0
1,774,234	-		LU632_RS09370	0.52	+1.0
1,774,296	-		LU632_RS09370	0.56	-0.2
1,774,360	+		LU632_RS09370	0.61	+2.0
1,774,360	+		LU632_RS09370	0.61	-1.0
1,774,361	-		LU632_RS09370	0.62	-1.4
1,774,361	-		LU632_RS09370	0.62	+0.7
1,774,362	+		LU632_RS09370	0.62	-0.3
1,774,363	-		LU632_RS09370	0.62	-2.4
1,774,363	-		LU632_RS09370	0.62	-1.5
1,774,363	-		LU632_RS09370	0.62	-0.5
1,774,482	-		LU632_RS09370	0.71	+1.0
1,774,482	-		LU632_RS09370	0.71	+0.5
1,774,549	+		LU632_RS09370	0.76	-2.9
1,774,662	+		LU632_RS09370	0.85	+1.0
1,774,662	+		LU632_RS09370	0.85	-1.3
1,774,675	+		LU632_RS09370	0.86	+1.7
1,774,704	+		LU632_RS09370	0.88	+1.6
1,774,705	-		LU632_RS09370	0.88	-0.7
1,774,705	-		LU632_RS09370	0.88	+0.5
1,774,840	+				+1.9
1,774,840	+				+0.1
1,774,841	-				+0.5
1,774,841	-				-0.3
1,774,841	-				-1.3
1,774,844	+				-0.7
1,774,845	-				+0.2
1,774,845	-				-1.8
1,774,876	-				+0.0
1,774,982	-		LU632_RS09375	0.18	-0.3
1,774,983	+		LU632_RS09375	0.18	+0.7
1,774,983	+		LU632_RS09375	0.18	-0.6
1,774,984	-		LU632_RS09375	0.18	+2.6
1,774,984	-		LU632_RS09375	0.18	+1.3
1,775,129	+		LU632_RS09375	0.38	+0.1
1,775,242	+		LU632_RS09375	0.54	+1.3
1,775,242	+		LU632_RS09375	0.54	-0.0
1,775,242	+		LU632_RS09375	0.54	+2.3
1,775,243	-		LU632_RS09375	0.54	+0.7
1,775,243	-		LU632_RS09375	0.54	+0.5
1,775,243	-		LU632_RS09375	0.54	+0.3
1,775,243	-		LU632_RS09375	0.54	+1.6
1,775,243	-		LU632_RS09375	0.54	-0.4
1,775,328	-		LU632_RS09375	0.66	-0.8
1,775,328	-		LU632_RS09375	0.66	+1.3
1,775,472	+		LU632_RS09375	0.86	+1.2
1,775,472	+		LU632_RS09375	0.86	-0.1
1,775,473	-		LU632_RS09375	0.86	+2.5
1,775,473	-		LU632_RS09375	0.86	-0.7
1,775,473	-		LU632_RS09375	0.86	-0.1
1,775,629	+		LU632_RS09380	0.14	-0.8
1,775,629	+		LU632_RS09380	0.14	+2.3
1,775,636	+		LU632_RS09380	0.16	+0.2
1,775,651	-		LU632_RS09380	0.19	+0.5
1,775,653	+		LU632_RS09380	0.20	-1.0
1,775,654	-		LU632_RS09380	0.20	+1.6
1,775,692	-		LU632_RS09380	0.29	-1.3
1,775,692	-		LU632_RS09380	0.29	-2.0
1,775,733	+		LU632_RS09380	0.38	+1.3
1,775,766	+		LU632_RS09380	0.46	-0.3
1,775,803	-		LU632_RS09380	0.54	+0.7
1,775,838	+		LU632_RS09380	0.62	+3.3
1,775,848	+		LU632_RS09380	0.65	-0.9
1,775,914	+		LU632_RS09380	0.80	-1.3
1,775,918	+		LU632_RS09380	0.81	+0.9
1,775,919	-		LU632_RS09380	0.81	+1.2
1,775,919	-		LU632_RS09380	0.81	+0.7
1,775,959	+				-0.7
1,775,980	-				+0.1
1,776,141	-		LU632_RS09385	0.18	+0.7
1,776,297	+		LU632_RS09385	0.39	-0.7
1,776,297	+		LU632_RS09385	0.39	+0.5
1,776,297	+		LU632_RS09385	0.39	+0.9
1,776,298	-		LU632_RS09385	0.39	-0.1
1,776,326	-		LU632_RS09385	0.43	-1.8
1,776,331	+		LU632_RS09385	0.44	+0.1
1,776,331	+		LU632_RS09385	0.44	+0.7
1,776,444	-		LU632_RS09385	0.59	+1.2
1,776,457	+		LU632_RS09385	0.61	-2.0
1,776,508	+		LU632_RS09385	0.68	+0.6
1,776,509	-		LU632_RS09385	0.68	+0.9
1,776,509	-		LU632_RS09385	0.68	-0.0
1,776,511	+		LU632_RS09385	0.68	+2.1
1,776,511	+		LU632_RS09385	0.68	-1.5
1,776,515	-		LU632_RS09385	0.69	+0.8