Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09010 and LU632_RS09015 are separated by 131 nucleotides LU632_RS09015 and LU632_RS09020 overlap by 4 nucleotides LU632_RS09020 and LU632_RS09025 are separated by 17 nucleotides LU632_RS09025 and LU632_RS09030 are separated by 367 nucleotides
LU632_RS09010: LU632_RS09010 - DnaJ domain-containing protein, at 1,698,980 to 1,699,495
_RS09010
LU632_RS09015: LU632_RS09015 - hypothetical protein, at 1,699,627 to 1,700,169
_RS09015
LU632_RS09020: LU632_RS09020 - hypothetical protein, at 1,700,166 to 1,700,426
_RS09020
LU632_RS09025: LU632_RS09025 - XRE family transcriptional regulator, at 1,700,444 to 1,700,674
_RS09025
LU632_RS09030: LU632_RS09030 - hypothetical protein, at 1,701,042 to 1,701,254
_RS09030
Position (kb) 1699
1700
1701 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1699.000 kb on + strand at 1699.001 kb on - strand at 1699.069 kb on + strand, within LU632_RS09010 at 1699.197 kb on - strand, within LU632_RS09010 at 1699.382 kb on + strand, within LU632_RS09010 at 1699.383 kb on - strand, within LU632_RS09010 at 1699.436 kb on + strand, within LU632_RS09010 at 1699.493 kb on + strand at 1699.732 kb on - strand, within LU632_RS09015 at 1699.760 kb on - strand, within LU632_RS09015 at 1699.890 kb on + strand, within LU632_RS09015 at 1699.890 kb on + strand, within LU632_RS09015 at 1699.892 kb on + strand, within LU632_RS09015 at 1699.892 kb on + strand, within LU632_RS09015 at 1699.892 kb on + strand, within LU632_RS09015 at 1699.893 kb on - strand, within LU632_RS09015 at 1699.893 kb on - strand, within LU632_RS09015 at 1699.893 kb on - strand, within LU632_RS09015 at 1700.000 kb on + strand, within LU632_RS09015 at 1700.089 kb on + strand, within LU632_RS09015 at 1700.188 kb on - strand at 1700.424 kb on + strand at 1700.424 kb on + strand at 1700.517 kb on + strand, within LU632_RS09025 at 1701.067 kb on - strand, within LU632_RS09030 at 1701.131 kb on + strand, within LU632_RS09030
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 1,699,000 + +0.8 1,699,001 - +0.4 1,699,069 + LU632_RS09010 0.17 -0.2 1,699,197 - LU632_RS09010 0.42 +2.9 1,699,382 + LU632_RS09010 0.78 +1.0 1,699,383 - LU632_RS09010 0.78 +0.4 1,699,436 + LU632_RS09010 0.88 -0.6 1,699,493 + +1.4 1,699,732 - LU632_RS09015 0.19 -0.6 1,699,760 - LU632_RS09015 0.24 +1.1 1,699,890 + LU632_RS09015 0.48 -1.5 1,699,890 + LU632_RS09015 0.48 +0.2 1,699,892 + LU632_RS09015 0.49 +1.4 1,699,892 + LU632_RS09015 0.49 +0.6 1,699,892 + LU632_RS09015 0.49 -1.8 1,699,893 - LU632_RS09015 0.49 +1.6 1,699,893 - LU632_RS09015 0.49 -1.0 1,699,893 - LU632_RS09015 0.49 -0.6 1,700,000 + LU632_RS09015 0.69 -0.8 1,700,089 + LU632_RS09015 0.85 -2.6 1,700,188 - +1.3 1,700,424 + -2.1 1,700,424 + +2.2 1,700,517 + LU632_RS09025 0.32 -1.6 1,701,067 - LU632_RS09030 0.12 +2.5 1,701,131 + LU632_RS09030 0.42 +0.8
Or see this region's nucleotide sequence