Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08990

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,693,747	+	modA	LU632_RS08980	0.74	-1.7
1,693,812	+	modA	LU632_RS08980	0.83	-1.7
1,693,826	-	modA	LU632_RS08980	0.85	-0.1
1,693,886	+				-1.7
1,693,886	+				-1.5
1,694,033	-	modB	LU632_RS08985	0.14	+0.1
1,694,128	-	modB	LU632_RS08985	0.27	+0.0
1,694,165	-	modB	LU632_RS08985	0.33	-2.2
1,694,178	+	modB	LU632_RS08985	0.34	+0.5
1,694,178	+	modB	LU632_RS08985	0.34	+1.5
1,694,179	-	modB	LU632_RS08985	0.35	-1.7
1,694,179	-	modB	LU632_RS08985	0.35	+0.7
1,694,181	-	modB	LU632_RS08985	0.35	+0.1
1,694,441	+	modB	LU632_RS08985	0.72	+1.3
1,694,442	-	modB	LU632_RS08985	0.72	-0.3
1,694,493	+	modB	LU632_RS08985	0.80	+0.0
1,694,493	+	modB	LU632_RS08985	0.80	-0.1
1,694,493	+	modB	LU632_RS08985	0.80	-1.8
1,694,493	+	modB	LU632_RS08985	0.80	-1.0
1,694,493	+	modB	LU632_RS08985	0.80	-0.5
1,694,494	-	modB	LU632_RS08985	0.80	+2.6
1,694,494	-	modB	LU632_RS08985	0.80	+0.6
1,694,494	-	modB	LU632_RS08985	0.80	-1.7
1,694,494	-	modB	LU632_RS08985	0.80	+0.3
1,694,494	-	modB	LU632_RS08985	0.80	+0.6
1,694,495	+	modB	LU632_RS08985	0.80	+0.5
1,694,495	+	modB	LU632_RS08985	0.80	-0.2
1,694,495	+	modB	LU632_RS08985	0.80	+0.9
1,694,632	-				-0.7
1,694,632	-				+0.6
1,694,632	-				+1.0
1,694,671	+				-0.4
1,694,746	-	modC	LU632_RS08990	0.11	+0.5
1,694,750	-	modC	LU632_RS08990	0.12	+0.3
1,694,922	-	modC	LU632_RS08990	0.28	+0.8
1,695,111	+	modC	LU632_RS08990	0.46	+0.0
1,695,115	+	modC	LU632_RS08990	0.46	+0.3
1,695,116	-	modC	LU632_RS08990	0.46	-1.7
1,695,116	-	modC	LU632_RS08990	0.46	-1.1
1,695,127	-	modC	LU632_RS08990	0.47	+0.7
1,695,139	-	modC	LU632_RS08990	0.48	-1.8
1,695,176	+	modC	LU632_RS08990	0.52	+1.1
1,695,176	+	modC	LU632_RS08990	0.52	+0.8
1,695,177	-	modC	LU632_RS08990	0.52	-1.1
1,695,223	-	modC	LU632_RS08990	0.56	-0.4
1,695,223	-	modC	LU632_RS08990	0.56	-0.7
1,695,223	-	modC	LU632_RS08990	0.56	-0.9
1,695,223	-	modC	LU632_RS08990	0.56	+0.9
1,695,228	+	modC	LU632_RS08990	0.57	-1.5
1,695,362	+	modC	LU632_RS08990	0.69	-0.1
1,695,397	+	modC	LU632_RS08990	0.73	+1.1
1,695,397	+	modC	LU632_RS08990	0.73	-1.2
1,695,397	+	modC	LU632_RS08990	0.73	+0.0
1,695,398	-	modC	LU632_RS08990	0.73	-0.2
1,695,511	+	modC	LU632_RS08990	0.83	+2.2
1,695,555	+	modC	LU632_RS08990	0.88	+1.8
1,695,579	+	modC	LU632_RS08990	0.90	-0.4
1,695,602	-				+0.9
1,695,662	-				+3.3