Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08845

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,666,909	+				-1.2
1,666,956	-				-1.4
1,667,190	+				-0.8
1,667,426	-				+1.0
1,667,457	+				+0.5
1,667,528	+				+0.2
1,667,566	+				+1.1
1,667,590	-				+1.1
1,667,647	-				+1.1
1,667,647	-				-0.2
1,667,699	+				+0.7
1,667,882	-				-0.2
1,667,926	+				+1.7
1,667,940	-				-0.2
1,667,940	-				+1.8
1,668,211	+		LU632_RS08845	0.14	-0.2
1,668,212	-		LU632_RS08845	0.15	+0.1
1,668,212	-		LU632_RS08845	0.15	-1.2
1,668,212	-		LU632_RS08845	0.15	-1.6
1,668,297	+		LU632_RS08845	0.18	+0.9
1,668,317	+		LU632_RS08845	0.18	+0.7
1,668,454	-		LU632_RS08845	0.23	-0.2
1,668,454	-		LU632_RS08845	0.23	+1.0
1,668,723	-		LU632_RS08845	0.33	-1.8
1,668,723	-		LU632_RS08845	0.33	-0.2
1,668,723	-		LU632_RS08845	0.33	-0.7
1,668,723	-		LU632_RS08845	0.33	+0.2
1,668,785	-		LU632_RS08845	0.35	+0.2
1,668,787	+		LU632_RS08845	0.35	+0.2
1,668,787	+		LU632_RS08845	0.35	+0.3
1,668,811	+		LU632_RS08845	0.36	+2.7
1,668,811	+		LU632_RS08845	0.36	-0.8
1,668,812	-		LU632_RS08845	0.36	-0.4
1,668,812	-		LU632_RS08845	0.36	-1.8
1,668,812	-		LU632_RS08845	0.36	-2.1
1,668,812	-		LU632_RS08845	0.36	+1.4
1,668,813	+		LU632_RS08845	0.36	-2.2
1,668,814	-		LU632_RS08845	0.36	+1.4
1,668,814	-		LU632_RS08845	0.36	-1.2
1,668,814	-		LU632_RS08845	0.36	+0.9
1,668,868	+		LU632_RS08845	0.38	-0.6
1,669,194	+		LU632_RS08845	0.49	-0.2
1,669,310	-		LU632_RS08845	0.54	-0.3
1,669,331	-		LU632_RS08845	0.54	+0.6
1,669,517	-		LU632_RS08845	0.61	-0.5
1,669,580	+		LU632_RS08845	0.63	+1.9
1,669,580	+		LU632_RS08845	0.63	+1.4
1,669,776	+		LU632_RS08845	0.70	-1.2
1,669,811	-		LU632_RS08845	0.71	-0.0
1,669,811	-		LU632_RS08845	0.71	+1.2
1,669,853	-		LU632_RS08845	0.73	+0.1
1,670,022	-		LU632_RS08845	0.79	+0.2
1,670,023	+		LU632_RS08845	0.79	+0.3
1,670,024	-		LU632_RS08845	0.79	-1.2
1,670,075	-		LU632_RS08845	0.81	+0.4
1,670,155	-		LU632_RS08845	0.84	+0.8
1,670,163	+		LU632_RS08845	0.84	-1.2
1,670,163	+		LU632_RS08845	0.84	-0.3
1,670,163	+		LU632_RS08845	0.84	-0.2
1,670,163	+		LU632_RS08845	0.84	-0.3
1,670,164	-		LU632_RS08845	0.84	+1.1
1,670,164	-		LU632_RS08845	0.84	-1.6
1,670,164	-		LU632_RS08845	0.84	-0.3
1,670,164	-		LU632_RS08845	0.84	-2.6
1,670,164	-		LU632_RS08845	0.84	+1.5
1,670,167	+		LU632_RS08845	0.84	-0.6
1,670,167	+		LU632_RS08845	0.84	+1.5
1,670,168	-		LU632_RS08845	0.84	+0.2
1,670,168	-		LU632_RS08845	0.84	-2.2
1,670,169	+		LU632_RS08845	0.84	-1.6
1,670,169	+		LU632_RS08845	0.84	-0.6
1,670,170	-		LU632_RS08845	0.84	-0.5
1,670,170	-		LU632_RS08845	0.84	-0.7
1,670,170	-		LU632_RS08845	0.84	-0.3
1,670,170	-		LU632_RS08845	0.84	+0.8
1,670,242	+		LU632_RS08845	0.87	-1.2
1,670,243	-		LU632_RS08845	0.87	+1.2
1,670,243	-		LU632_RS08845	0.87	-1.1
1,670,422	+				+0.5
1,670,548	+				+2.3
1,670,549	-				+1.6
1,670,550	+				+0.0
1,670,550	+				+0.0
1,670,550	+				+0.8
1,670,551	-				-0.7
1,670,551	-				-1.1
1,670,681	+				+0.5
1,670,681	+				-2.1
1,670,733	+				-2.0
1,670,733	+				-1.7
1,670,803	+				-1.9
1,670,848	-				+0.4
1,670,895	+				+0.2
1,670,940	+				+0.7
1,670,941	-				-0.6
1,670,941	-				-0.6
1,670,956	+				+0.2
1,670,956	+				-1.2
1,670,957	-				+0.3
1,670,958	+				+0.8
1,670,961	-				-0.7
1,670,986	+				-0.4
1,671,112	+				+0.3
1,671,113	-				+3.3
1,671,231	+				-2.0
1,671,231	+				-0.2
1,671,231	+				-2.7
1,671,402	+	rfbB	LU632_RS08850	0.21	-1.2
1,671,402	+	rfbB	LU632_RS08850	0.21	-1.0