Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08240 and LU632_RS08245 are separated by 128 nucleotides LU632_RS08245 and tehB overlap by 51 nucleotides tehB and ppx overlap by 4 nucleotides ppx and ppk1 are separated by 6 nucleotides
LU632_RS08240: LU632_RS08240 - YfgG family protein, at 1,550,492 to 1,550,659
_RS08240
LU632_RS08245: LU632_RS08245 - hypothetical protein, at 1,550,788 to 1,551,042
_RS08245
LU632_RS08250: tehB - tellurite resistance methyltransferase TehB, at 1,550,992 to 1,551,597
tehB
LU632_RS08255: ppx - exopolyphosphatase, at 1,551,594 to 1,553,126
ppx
LU632_RS08260: ppk1 - polyphosphate kinase 1, at 1,553,133 to 1,555,193
ppk1
Position (kb) 1551
1552
1553
1554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1550.615 kb on - strand, within LU632_RS08240 at 1550.669 kb on + strand at 1550.670 kb on - strand at 1550.729 kb on - strand at 1550.771 kb on - strand at 1550.862 kb on + strand, within LU632_RS08245 at 1550.863 kb on - strand, within LU632_RS08245 at 1550.897 kb on + strand, within LU632_RS08245 at 1550.931 kb on - strand, within LU632_RS08245 at 1550.933 kb on + strand, within LU632_RS08245 at 1550.934 kb on - strand, within LU632_RS08245 at 1550.958 kb on + strand, within LU632_RS08245 at 1551.085 kb on - strand, within tehB at 1551.094 kb on - strand, within tehB at 1551.122 kb on + strand, within tehB at 1551.150 kb on + strand, within tehB at 1551.212 kb on + strand, within tehB at 1551.312 kb on - strand, within tehB at 1551.418 kb on - strand, within tehB at 1551.459 kb on - strand, within tehB at 1551.511 kb on + strand, within tehB at 1551.716 kb on + strand at 1551.964 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.094 kb on - strand, within ppx at 1552.368 kb on - strand, within ppx at 1552.387 kb on + strand, within ppx at 1552.416 kb on + strand, within ppx at 1552.444 kb on - strand, within ppx at 1552.598 kb on - strand, within ppx at 1552.730 kb on + strand, within ppx at 1552.788 kb on - strand, within ppx at 1553.021 kb on + strand at 1553.021 kb on + strand at 1553.022 kb on - strand at 1553.112 kb on - strand at 1553.118 kb on + strand at 1553.126 kb on + strand at 1553.127 kb on - strand at 1553.162 kb on - strand at 1553.167 kb on + strand at 1553.168 kb on - strand at 1553.349 kb on - strand, within ppk1 at 1553.351 kb on + strand, within ppk1 at 1553.352 kb on - strand, within ppk1 at 1553.352 kb on - strand, within ppk1 at 1553.463 kb on - strand, within ppk1 at 1553.522 kb on + strand, within ppk1 at 1553.522 kb on + strand, within ppk1 at 1553.551 kb on + strand, within ppk1 at 1553.551 kb on + strand, within ppk1 at 1553.552 kb on - strand, within ppk1 at 1553.585 kb on + strand, within ppk1 at 1553.585 kb on + strand, within ppk1 at 1553.590 kb on - strand, within ppk1 at 1553.590 kb on - strand, within ppk1 at 1553.656 kb on + strand, within ppk1 at 1553.735 kb on + strand, within ppk1 at 1553.749 kb on - strand, within ppk1 at 1553.788 kb on + strand, within ppk1 at 1553.925 kb on - strand, within ppk1 at 1554.079 kb on + strand, within ppk1
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 1,550,615 - LU632_RS08240 0.73 +1.1 1,550,669 + +1.0 1,550,670 - +0.9 1,550,729 - +1.2 1,550,771 - +1.4 1,550,862 + LU632_RS08245 0.29 +1.7 1,550,863 - LU632_RS08245 0.29 +0.5 1,550,897 + LU632_RS08245 0.43 +2.6 1,550,931 - LU632_RS08245 0.56 -0.2 1,550,933 + LU632_RS08245 0.57 +0.0 1,550,934 - LU632_RS08245 0.57 +3.0 1,550,958 + LU632_RS08245 0.67 +1.6 1,551,085 - tehB LU632_RS08250 0.15 +0.4 1,551,094 - tehB LU632_RS08250 0.17 +0.9 1,551,122 + tehB LU632_RS08250 0.21 +0.1 1,551,150 + tehB LU632_RS08250 0.26 -0.4 1,551,212 + tehB LU632_RS08250 0.36 +0.3 1,551,312 - tehB LU632_RS08250 0.53 -0.4 1,551,418 - tehB LU632_RS08250 0.70 -1.3 1,551,459 - tehB LU632_RS08250 0.77 +1.0 1,551,511 + tehB LU632_RS08250 0.86 +1.1 1,551,716 + +2.4 1,551,964 + ppx LU632_RS08255 0.24 -0.1 1,552,093 + ppx LU632_RS08255 0.33 -1.1 1,552,093 + ppx LU632_RS08255 0.33 -1.4 1,552,093 + ppx LU632_RS08255 0.33 -1.1 1,552,093 + ppx LU632_RS08255 0.33 -0.1 1,552,094 - ppx LU632_RS08255 0.33 -0.1 1,552,368 - ppx LU632_RS08255 0.50 +0.9 1,552,387 + ppx LU632_RS08255 0.52 -1.0 1,552,416 + ppx LU632_RS08255 0.54 -1.4 1,552,444 - ppx LU632_RS08255 0.55 +0.6 1,552,598 - ppx LU632_RS08255 0.65 -0.6 1,552,730 + ppx LU632_RS08255 0.74 +1.4 1,552,788 - ppx LU632_RS08255 0.78 -0.7 1,553,021 + -0.9 1,553,021 + -0.6 1,553,022 - +1.4 1,553,112 - -0.7 1,553,118 + +3.0 1,553,126 + +0.2 1,553,127 - +2.4 1,553,162 - +0.4 1,553,167 + -2.5 1,553,168 - -0.1 1,553,349 - ppk1 LU632_RS08260 0.10 +0.9 1,553,351 + ppk1 LU632_RS08260 0.11 -1.1 1,553,352 - ppk1 LU632_RS08260 0.11 +3.4 1,553,352 - ppk1 LU632_RS08260 0.11 +0.2 1,553,463 - ppk1 LU632_RS08260 0.16 +0.9 1,553,522 + ppk1 LU632_RS08260 0.19 +1.4 1,553,522 + ppk1 LU632_RS08260 0.19 +0.9 1,553,551 + ppk1 LU632_RS08260 0.20 -0.1 1,553,551 + ppk1 LU632_RS08260 0.20 +1.4 1,553,552 - ppk1 LU632_RS08260 0.20 -2.8 1,553,585 + ppk1 LU632_RS08260 0.22 +0.1 1,553,585 + ppk1 LU632_RS08260 0.22 -2.1 1,553,590 - ppk1 LU632_RS08260 0.22 -0.1 1,553,590 - ppk1 LU632_RS08260 0.22 -0.4 1,553,656 + ppk1 LU632_RS08260 0.25 -0.1 1,553,735 + ppk1 LU632_RS08260 0.29 -1.1 1,553,749 - ppk1 LU632_RS08260 0.30 -0.6 1,553,788 + ppk1 LU632_RS08260 0.32 +2.0 1,553,925 - ppk1 LU632_RS08260 0.38 +1.4 1,554,079 + ppk1 LU632_RS08260 0.46 -0.4
Or see this region's nucleotide sequence