Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07695 and LU632_RS07700 are separated by 10 nucleotides LU632_RS07700 and LU632_RS07705 are separated by 2 nucleotides LU632_RS07705 and LU632_RS07710 are separated by 17 nucleotides LU632_RS07710 and LU632_RS07715 are separated by 76 nucleotides
LU632_RS07695: LU632_RS07695 - DDE-type integrase/transposase/recombinase, at 1,439,222 to 1,440,991
_RS07695
LU632_RS07700: LU632_RS07700 - AAA family ATPase, at 1,441,002 to 1,442,168
_RS07700
LU632_RS07705: LU632_RS07705 - hypothetical protein, at 1,442,171 to 1,442,443
_RS07705
LU632_RS07710: LU632_RS07710 - DUF3164 family protein, at 1,442,461 to 1,443,072
_RS07710
LU632_RS07715: LU632_RS07715 - hypothetical protein, at 1,443,149 to 1,443,550
_RS07715
Position (kb) 1441
1442
1443 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1440.026 kb on - strand, within LU632_RS07695 at 1440.026 kb on - strand, within LU632_RS07695 at 1440.026 kb on - strand, within LU632_RS07695 at 1440.026 kb on - strand, within LU632_RS07695 at 1440.056 kb on - strand, within LU632_RS07695 at 1440.298 kb on - strand, within LU632_RS07695 at 1440.553 kb on - strand, within LU632_RS07695 at 1440.738 kb on - strand, within LU632_RS07695 at 1440.740 kb on - strand, within LU632_RS07695 at 1440.980 kb on - strand at 1441.182 kb on - strand, within LU632_RS07700 at 1441.205 kb on - strand, within LU632_RS07700 at 1441.294 kb on + strand, within LU632_RS07700 at 1441.543 kb on - strand, within LU632_RS07700 at 1441.614 kb on - strand, within LU632_RS07700 at 1442.069 kb on - strand at 1442.069 kb on - strand at 1442.069 kb on - strand at 1442.069 kb on - strand at 1442.224 kb on - strand, within LU632_RS07705 at 1442.346 kb on - strand, within LU632_RS07705 at 1442.351 kb on - strand, within LU632_RS07705 at 1442.352 kb on - strand, within LU632_RS07705 at 1442.434 kb on - strand at 1442.438 kb on - strand at 1442.486 kb on - strand at 1442.536 kb on + strand, within LU632_RS07710 at 1442.638 kb on + strand, within LU632_RS07710 at 1442.649 kb on - strand, within LU632_RS07710 at 1442.669 kb on - strand, within LU632_RS07710 at 1442.736 kb on + strand, within LU632_RS07710 at 1443.002 kb on - strand, within LU632_RS07710 at 1443.002 kb on - strand, within LU632_RS07710 at 1443.004 kb on - strand, within LU632_RS07710 at 1443.057 kb on + strand at 1443.058 kb on - strand at 1443.060 kb on - strand at 1443.060 kb on - strand at 1443.060 kb on - strand at 1443.060 kb on - strand at 1443.077 kb on - strand at 1443.148 kb on + strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand at 1443.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 1,440,026 - LU632_RS07695 0.45 -0.2 1,440,026 - LU632_RS07695 0.45 -1.1 1,440,026 - LU632_RS07695 0.45 -0.4 1,440,026 - LU632_RS07695 0.45 +0.7 1,440,056 - LU632_RS07695 0.47 -0.0 1,440,298 - LU632_RS07695 0.61 -0.4 1,440,553 - LU632_RS07695 0.75 -1.1 1,440,738 - LU632_RS07695 0.86 -0.9 1,440,740 - LU632_RS07695 0.86 -0.2 1,440,980 - +0.7 1,441,182 - LU632_RS07700 0.15 -0.4 1,441,205 - LU632_RS07700 0.17 -2.5 1,441,294 + LU632_RS07700 0.25 -0.4 1,441,543 - LU632_RS07700 0.46 +1.4 1,441,614 - LU632_RS07700 0.52 -1.5 1,442,069 - +3.5 1,442,069 - -0.2 1,442,069 - -1.2 1,442,069 - -1.4 1,442,224 - LU632_RS07705 0.19 +0.1 1,442,346 - LU632_RS07705 0.64 -1.4 1,442,351 - LU632_RS07705 0.66 -0.1 1,442,352 - LU632_RS07705 0.66 -0.3 1,442,434 - -1.3 1,442,438 - +1.1 1,442,486 - +2.7 1,442,536 + LU632_RS07710 0.12 +0.9 1,442,638 + LU632_RS07710 0.29 -0.4 1,442,649 - LU632_RS07710 0.31 +0.9 1,442,669 - LU632_RS07710 0.34 +0.6 1,442,736 + LU632_RS07710 0.45 -0.2 1,443,002 - LU632_RS07710 0.88 +0.1 1,443,002 - LU632_RS07710 0.88 -0.0 1,443,004 - LU632_RS07710 0.89 +0.4 1,443,057 + +0.1 1,443,058 - -0.6 1,443,060 - +1.1 1,443,060 - +0.7 1,443,060 - -0.5 1,443,060 - +0.6 1,443,077 - -1.6 1,443,148 + -2.2 1,443,149 - +1.0 1,443,149 - -0.3 1,443,149 - +0.9 1,443,149 - -1.3 1,443,149 - -0.0 1,443,149 - -0.3
Or see this region's nucleotide sequence