Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06690

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,285,138	-	cysA	LU632_RS06680	0.87	-1.3
1,285,141	+	cysA	LU632_RS06680	0.88	-0.3
1,285,142	-	cysA	LU632_RS06680	0.88	-0.2
1,285,142	-	cysA	LU632_RS06680	0.88	+0.2
1,285,142	-	cysA	LU632_RS06680	0.88	-1.0
1,285,142	-	cysA	LU632_RS06680	0.88	+1.1
1,285,145	-	cysA	LU632_RS06680	0.88	+1.4
1,285,177	+				+0.1
1,285,215	+				+0.3
1,285,257	+				-0.4
1,285,400	+	cysW	LU632_RS06685	0.13	-2.7
1,285,401	-	cysW	LU632_RS06685	0.13	-0.5
1,285,401	-	cysW	LU632_RS06685	0.13	-2.0
1,285,403	+	cysW	LU632_RS06685	0.13	-0.8
1,285,403	+	cysW	LU632_RS06685	0.13	-0.9
1,285,405	+	cysW	LU632_RS06685	0.14	-0.3
1,285,405	+	cysW	LU632_RS06685	0.14	+2.6
1,285,406	-	cysW	LU632_RS06685	0.14	-1.2
1,285,406	-	cysW	LU632_RS06685	0.14	+1.4
1,285,406	-	cysW	LU632_RS06685	0.14	+0.2
1,285,406	-	cysW	LU632_RS06685	0.14	-0.1
1,285,432	-	cysW	LU632_RS06685	0.17	+1.2
1,285,442	+	cysW	LU632_RS06685	0.18	-0.1
1,285,442	+	cysW	LU632_RS06685	0.18	-1.8
1,285,442	+	cysW	LU632_RS06685	0.18	+1.1
1,285,445	-	cysW	LU632_RS06685	0.18	-0.4
1,285,528	+	cysW	LU632_RS06685	0.28	-0.2
1,285,529	-	cysW	LU632_RS06685	0.28	+0.8
1,285,715	+	cysW	LU632_RS06685	0.50	-1.2
1,285,715	+	cysW	LU632_RS06685	0.50	+0.4
1,285,716	-	cysW	LU632_RS06685	0.50	-3.0
1,285,716	-	cysW	LU632_RS06685	0.50	+0.7
1,285,781	-	cysW	LU632_RS06685	0.58	-0.2
1,285,781	-	cysW	LU632_RS06685	0.58	-2.3
1,285,820	+	cysW	LU632_RS06685	0.62	-1.3
1,285,884	+	cysW	LU632_RS06685	0.70	+2.0
1,285,889	+	cysW	LU632_RS06685	0.71	+1.4
1,285,890	-	cysW	LU632_RS06685	0.71	+1.2
1,285,890	-	cysW	LU632_RS06685	0.71	-2.0
1,285,905	+	cysW	LU632_RS06685	0.72	-0.6
1,286,075	+				+0.2
1,286,076	-				+0.3
1,286,079	+				-0.2
1,286,140	-				+1.4
1,286,308	+	cysT	LU632_RS06690	0.20	-2.7
1,286,308	+	cysT	LU632_RS06690	0.20	+0.1
1,286,309	-	cysT	LU632_RS06690	0.21	-0.2
1,286,525	-	cysT	LU632_RS06690	0.46	+0.4
1,286,559	+	cysT	LU632_RS06690	0.50	-0.4
1,286,733	-	cysT	LU632_RS06690	0.71	-0.4
1,286,832	+	cysT	LU632_RS06690	0.83	+0.7
1,286,953	+				+0.5
1,286,960	-				-0.2
1,286,965	+				-0.7
1,286,990	-				-0.3
1,287,035	-				-0.8
1,287,074	-	cysP	LU632_RS06695	0.10	-1.0
1,287,137	+	cysP	LU632_RS06695	0.16	+1.1
1,287,138	-	cysP	LU632_RS06695	0.16	-2.0
1,287,138	-	cysP	LU632_RS06695	0.16	+0.4
1,287,138	-	cysP	LU632_RS06695	0.16	-0.7
1,287,171	+	cysP	LU632_RS06695	0.20	+0.7
1,287,173	+	cysP	LU632_RS06695	0.20	+0.1
1,287,174	-	cysP	LU632_RS06695	0.20	-0.3
1,287,174	-	cysP	LU632_RS06695	0.20	-2.5
1,287,174	-	cysP	LU632_RS06695	0.20	-0.2
1,287,180	-	cysP	LU632_RS06695	0.21	-0.9
1,287,195	+	cysP	LU632_RS06695	0.22	-0.3
1,287,196	-	cysP	LU632_RS06695	0.22	-0.6
1,287,265	-	cysP	LU632_RS06695	0.29	-0.1
1,287,282	+	cysP	LU632_RS06695	0.31	-1.0
1,287,283	-	cysP	LU632_RS06695	0.31	-0.6
1,287,347	-	cysP	LU632_RS06695	0.37	+0.2
1,287,349	+	cysP	LU632_RS06695	0.37	+0.9
1,287,349	+	cysP	LU632_RS06695	0.37	-0.4
1,287,349	+	cysP	LU632_RS06695	0.37	-0.8
1,287,439	-	cysP	LU632_RS06695	0.46	+0.3
1,287,503	+	cysP	LU632_RS06695	0.52	-0.1
1,287,503	+	cysP	LU632_RS06695	0.52	-2.0
1,287,504	-	cysP	LU632_RS06695	0.52	-0.9
1,287,532	-	cysP	LU632_RS06695	0.55	-1.9
1,287,595	-	cysP	LU632_RS06695	0.61	+0.5
1,287,633	-	cysP	LU632_RS06695	0.65	-0.2
1,287,648	+	cysP	LU632_RS06695	0.67	+1.2
1,287,728	+	cysP	LU632_RS06695	0.74	-0.5
1,287,728	+	cysP	LU632_RS06695	0.74	-0.6
1,287,728	+	cysP	LU632_RS06695	0.74	+1.3
1,287,728	+	cysP	LU632_RS06695	0.74	+2.4
1,287,729	-	cysP	LU632_RS06695	0.75	-1.6
1,287,729	-	cysP	LU632_RS06695	0.75	-2.0
1,287,729	-	cysP	LU632_RS06695	0.75	-2.5
1,287,729	-	cysP	LU632_RS06695	0.75	+2.9
1,287,736	+	cysP	LU632_RS06695	0.75	+0.4
1,287,757	+	cysP	LU632_RS06695	0.77	+0.5
1,287,757	+	cysP	LU632_RS06695	0.77	+0.6
1,287,758	-	cysP	LU632_RS06695	0.77	-0.1
1,287,891	-				-2.2