Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06680

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,283,472	+	cysM	LU632_RS06675	0.54	-1.4
1,283,588	-	cysM	LU632_RS06675	0.67	+1.4
1,283,595	+	cysM	LU632_RS06675	0.68	+1.4
1,283,596	-	cysM	LU632_RS06675	0.68	+0.4
1,283,778	+	cysM	LU632_RS06675	0.89	-0.2
1,283,860	-				+0.8
1,283,860	-				-1.4
1,283,880	+				-0.2
1,284,008	+				+0.4
1,284,023	+				+1.4
1,284,056	-				-0.3
1,284,056	-				-1.3
1,284,056	-				-0.0
1,284,056	-				+1.3
1,284,171	+				+1.4
1,284,171	+				+1.4
1,284,171	+				+0.9
1,284,172	-				+1.4
1,284,172	-				+0.5
1,284,290	+				+0.4
1,284,291	+				-1.3
1,284,291	+				-0.5
1,284,363	-	cysA	LU632_RS06680	0.16	+1.5
1,284,451	+	cysA	LU632_RS06680	0.24	-0.8
1,284,488	+	cysA	LU632_RS06680	0.28	-2.9
1,284,634	-	cysA	LU632_RS06680	0.41	-0.4
1,284,717	+	cysA	LU632_RS06680	0.49	-0.2
1,284,717	+	cysA	LU632_RS06680	0.49	-0.3
1,284,718	-	cysA	LU632_RS06680	0.49	-0.4
1,285,028	+	cysA	LU632_RS06680	0.77	-1.8
1,285,028	+	cysA	LU632_RS06680	0.77	+3.2
1,285,029	-	cysA	LU632_RS06680	0.77	+1.1
1,285,138	-	cysA	LU632_RS06680	0.87	-1.3
1,285,141	+	cysA	LU632_RS06680	0.88	-0.3
1,285,142	-	cysA	LU632_RS06680	0.88	-0.2
1,285,142	-	cysA	LU632_RS06680	0.88	+0.2
1,285,142	-	cysA	LU632_RS06680	0.88	-1.0
1,285,142	-	cysA	LU632_RS06680	0.88	+1.1
1,285,145	-	cysA	LU632_RS06680	0.88	+1.4
1,285,177	+				+0.1
1,285,215	+				+0.3
1,285,257	+				-0.4
1,285,400	+	cysW	LU632_RS06685	0.13	-2.7
1,285,401	-	cysW	LU632_RS06685	0.13	-0.5
1,285,401	-	cysW	LU632_RS06685	0.13	-2.0
1,285,403	+	cysW	LU632_RS06685	0.13	-0.8
1,285,403	+	cysW	LU632_RS06685	0.13	-0.9
1,285,405	+	cysW	LU632_RS06685	0.14	-0.3
1,285,405	+	cysW	LU632_RS06685	0.14	+2.6
1,285,406	-	cysW	LU632_RS06685	0.14	-1.2
1,285,406	-	cysW	LU632_RS06685	0.14	+1.4
1,285,406	-	cysW	LU632_RS06685	0.14	+0.2
1,285,406	-	cysW	LU632_RS06685	0.14	-0.1
1,285,432	-	cysW	LU632_RS06685	0.17	+1.2
1,285,442	+	cysW	LU632_RS06685	0.18	-0.1
1,285,442	+	cysW	LU632_RS06685	0.18	-1.8
1,285,442	+	cysW	LU632_RS06685	0.18	+1.1
1,285,445	-	cysW	LU632_RS06685	0.18	-0.4
1,285,528	+	cysW	LU632_RS06685	0.28	-0.2
1,285,529	-	cysW	LU632_RS06685	0.28	+0.8
1,285,715	+	cysW	LU632_RS06685	0.50	-1.2
1,285,715	+	cysW	LU632_RS06685	0.50	+0.4
1,285,716	-	cysW	LU632_RS06685	0.50	-3.0
1,285,716	-	cysW	LU632_RS06685	0.50	+0.7
1,285,781	-	cysW	LU632_RS06685	0.58	-0.2
1,285,781	-	cysW	LU632_RS06685	0.58	-2.3
1,285,820	+	cysW	LU632_RS06685	0.62	-1.3
1,285,884	+	cysW	LU632_RS06685	0.70	+2.0
1,285,889	+	cysW	LU632_RS06685	0.71	+1.4
1,285,890	-	cysW	LU632_RS06685	0.71	+1.2
1,285,890	-	cysW	LU632_RS06685	0.71	-2.0
1,285,905	+	cysW	LU632_RS06685	0.72	-0.6
1,286,075	+				+0.2
1,286,076	-				+0.3
1,286,079	+				-0.2
1,286,140	-				+1.4