Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06340

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,214,420	-		LU632_RS06335	0.20	-2.9
1,214,450	-		LU632_RS06335	0.23	-1.3
1,214,547	+		LU632_RS06335	0.31	-0.4
1,214,648	+		LU632_RS06335	0.40	-0.1
1,214,697	-		LU632_RS06335	0.44	-0.6
1,214,697	-		LU632_RS06335	0.44	-0.2
1,214,913	-		LU632_RS06335	0.63	+0.1
1,214,913	-		LU632_RS06335	0.63	-1.1
1,214,913	-		LU632_RS06335	0.63	+1.4
1,214,913	-		LU632_RS06335	0.63	-0.8
1,214,913	-		LU632_RS06335	0.63	-0.5
1,215,122	+		LU632_RS06335	0.81	-3.3
1,215,127	-		LU632_RS06335	0.82	-0.9
1,215,134	-		LU632_RS06335	0.82	-0.3
1,215,139	-		LU632_RS06335	0.83	-1.7
1,215,153	+		LU632_RS06335	0.84	-2.6
1,215,153	+		LU632_RS06335	0.84	-0.7
1,215,154	-		LU632_RS06335	0.84	-1.0
1,215,294	+				-0.6
1,215,334	+				-0.5
1,215,335	-				-1.2
1,216,035	+	barA	LU632_RS06340	0.24	+2.7
1,216,036	-	barA	LU632_RS06340	0.24	-0.2
1,216,819	+	barA	LU632_RS06340	0.53	+2.0
1,216,822	+	barA	LU632_RS06340	0.53	+1.8
1,217,074	+	barA	LU632_RS06340	0.62	+2.4
1,217,418	-	barA	LU632_RS06340	0.75	+2.4
1,217,422	+	barA	LU632_RS06340	0.75	+0.4
1,217,587	-	barA	LU632_RS06340	0.81	-0.2
1,217,746	+	barA	LU632_RS06340	0.87	+3.0
1,218,107	-				-0.2
1,218,107	-				-1.0
1,218,118	-				+0.0
1,218,171	-				+0.7
1,218,171	-				+0.6
1,218,171	-				-0.3
1,218,196	+				+2.4
1,218,197	-				+1.9
1,218,217	+				+1.6
1,218,584	-	rlmD	LU632_RS06345	0.27	+0.4
1,218,590	+	rlmD	LU632_RS06345	0.28	-0.9
1,218,590	+	rlmD	LU632_RS06345	0.28	-1.6
1,218,590	+	rlmD	LU632_RS06345	0.28	+0.2
1,218,591	-	rlmD	LU632_RS06345	0.28	-1.9
1,218,591	-	rlmD	LU632_RS06345	0.28	-1.7
1,218,642	+	rlmD	LU632_RS06345	0.32	-0.3
1,218,642	+	rlmD	LU632_RS06345	0.32	+0.7
1,218,642	+	rlmD	LU632_RS06345	0.32	-0.4
1,218,716	+	rlmD	LU632_RS06345	0.37	-0.2
1,218,716	+	rlmD	LU632_RS06345	0.37	+0.3
1,218,717	-	rlmD	LU632_RS06345	0.37	+0.2
1,218,746	+	rlmD	LU632_RS06345	0.39	+1.4
1,218,746	+	rlmD	LU632_RS06345	0.39	-2.4
1,218,746	+	rlmD	LU632_RS06345	0.39	-0.2
1,218,754	+	rlmD	LU632_RS06345	0.40	-1.0
1,218,834	-	rlmD	LU632_RS06345	0.46	+1.2
1,218,914	+	rlmD	LU632_RS06345	0.52	+0.8
1,218,955	+	rlmD	LU632_RS06345	0.55	-1.4
1,219,029	-	rlmD	LU632_RS06345	0.61	-0.0
1,219,079	-	rlmD	LU632_RS06345	0.64	+0.6
1,219,089	-	rlmD	LU632_RS06345	0.65	-0.3