Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06045

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,146,723	+	lysA	LU632_RS06040	0.25	-1.0
1,146,723	+	lysA	LU632_RS06040	0.25	-2.3
1,146,724	-	lysA	LU632_RS06040	0.25	-1.3
1,146,724	-	lysA	LU632_RS06040	0.25	-0.1
1,146,994	+	lysA	LU632_RS06040	0.46	-1.5
1,147,132	+	lysA	LU632_RS06040	0.57	-1.5
1,147,158	+	lysA	LU632_RS06040	0.59	-0.5
1,147,165	-	lysA	LU632_RS06040	0.60	+1.5
1,147,333	+	lysA	LU632_RS06040	0.73	-2.0
1,147,333	+	lysA	LU632_RS06040	0.73	-0.5
1,147,334	-	lysA	LU632_RS06040	0.73	-1.5
1,147,343	-	lysA	LU632_RS06040	0.74	+0.5
1,147,350	+	lysA	LU632_RS06040	0.75	-0.7
1,147,350	+	lysA	LU632_RS06040	0.75	-1.5
1,147,351	-	lysA	LU632_RS06040	0.75	-0.2
1,147,559	-				-1.9
1,147,664	+				+0.8
1,147,666	+				-1.0
1,147,667	-				+2.5
1,147,836	+	galR	LU632_RS06045	0.16	-1.5
1,147,837	-	galR	LU632_RS06045	0.16	+3.1
1,147,840	+	galR	LU632_RS06045	0.16	+0.0
1,147,841	-	galR	LU632_RS06045	0.16	-2.0
1,148,083	+	galR	LU632_RS06045	0.41	+0.2
1,148,083	+	galR	LU632_RS06045	0.41	-0.1
1,148,135	+	galR	LU632_RS06045	0.46	-1.7
1,148,195	-	galR	LU632_RS06045	0.52	+0.1
1,148,195	-	galR	LU632_RS06045	0.52	-1.6
1,148,247	+	galR	LU632_RS06045	0.57	+0.5
1,148,286	+	galR	LU632_RS06045	0.61	+0.9
1,148,546	-	galR	LU632_RS06045	0.87	-2.6
1,148,678	+				-2.1
1,148,700	-				+0.8
1,148,739	+				+0.8
1,148,751	-				-1.0
1,148,764	+				-0.1
1,148,765	-				+0.7
1,148,807	+				-0.1
1,148,808	-				-0.1
1,148,808	-				-1.7
1,148,808	-				-2.2
1,148,808	-				+2.5
1,148,891	+				+0.3
1,148,891	+				+0.9
1,148,891	+				+0.2
1,148,989	+				-1.7
1,148,989	+				+0.2
1,148,990	-				+0.3
1,148,990	-				+1.1
1,148,990	-				-1.1
1,148,990	-				-0.3
1,148,990	-				-0.3
1,149,186	-		LU632_RS06050	0.14	-2.2
1,149,248	+		LU632_RS06050	0.17	-0.5
1,149,252	+		LU632_RS06050	0.17	+0.3
1,149,253	-		LU632_RS06050	0.17	-0.8
1,149,303	-		LU632_RS06050	0.19	-1.1
1,149,465	-		LU632_RS06050	0.27	+1.7
1,149,510	+		LU632_RS06050	0.29	+1.5
1,149,510	+		LU632_RS06050	0.29	+0.9
1,149,511	-		LU632_RS06050	0.29	-1.2
1,149,629	+		LU632_RS06050	0.34	+0.3