Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05920

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
1,123,936	+	gcvP	LU632_RS05915	0.80	-0.6
1,123,936	+	gcvP	LU632_RS05915	0.80	-0.3
1,124,003	-	gcvP	LU632_RS05915	0.82	-1.7
1,124,039	+	gcvP	LU632_RS05915	0.83	-0.4
1,124,039	+	gcvP	LU632_RS05915	0.83	-0.5
1,124,041	+	gcvP	LU632_RS05915	0.84	-1.3
1,124,075	+	gcvP	LU632_RS05915	0.85	-1.7
1,124,077	-	gcvP	LU632_RS05915	0.85	-0.1
1,124,077	-	gcvP	LU632_RS05915	0.85	-1.5
1,124,244	+				-0.7
1,124,245	-				+2.0
1,124,245	-				+1.5
1,124,306	+				-2.0
1,124,374	+				-0.3
1,124,375	-				-0.3
1,124,375	-				+0.2
1,124,415	+				+0.3
1,124,416	-				-0.2
1,124,416	-				+0.0
1,124,416	-				-1.1
1,124,419	+				-1.0
1,124,529	-				+0.7
1,124,556	-				+0.9
1,124,564	+				-2.1
1,124,568	+				-0.2
1,124,635	-				-0.5
1,124,717	+				-0.1
1,124,717	+				+4.3
1,124,717	+				+0.9
1,124,717	+				-1.3
1,124,718	-				-0.9
1,124,813	+		LU632_RS05920	0.12	-0.1
1,124,813	+		LU632_RS05920	0.12	-1.5
1,124,852	-		LU632_RS05920	0.25	+1.9
1,124,852	-		LU632_RS05920	0.25	-1.0
1,124,967	-		LU632_RS05920	0.65	+0.8
1,125,030	-		LU632_RS05920	0.87	-0.0
1,125,030	-		LU632_RS05920	0.87	+1.5
1,125,042	-				-0.9
1,125,122	+				-0.1
1,125,122	+				+0.3
1,125,123	-				-0.5
1,125,123	-				+0.8
1,125,182	-				-2.4
1,125,204	-				+0.3
1,125,279	-		LU632_RS05925	0.69	-1.0
1,125,295	-		LU632_RS05925	0.84	-0.7
1,125,328	-				+0.4
1,125,335	+				-1.1
1,125,357	-				-1.2
1,125,357	-				-1.1
1,125,370	+				-0.3
1,125,370	+				-0.1
1,125,370	+				+0.0
1,125,370	+				+1.3
1,125,371	-				+0.7
1,125,371	-				+0.3
1,125,371	-				+1.3
1,125,371	-				+0.1
1,125,395	-				+0.5
1,125,490	-				+1.9
1,125,534	+				-0.3
1,125,534	+				-0.4
1,125,535	-				+2.0
1,125,621	+				-0.4
1,125,623	+				-0.3
1,125,786	-		LU632_RS05930	0.14	+0.7
1,125,947	+		LU632_RS05930	0.25	+0.7
1,125,948	-		LU632_RS05930	0.25	-0.5