Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05060 and LU632_RS05065 are separated by 0 nucleotides LU632_RS05065 and LU632_RS05070 are separated by 56 nucleotides LU632_RS05070 and LU632_RS05075 are separated by 325 nucleotides LU632_RS05075 and LU632_RS05080 overlap by 23 nucleotides
LU632_RS05060: LU632_RS05060 - integrase domain-containing protein, at 986,288 to 987,345
_RS05060
LU632_RS05065: LU632_RS05065 - helix-turn-helix domain-containing protein, at 987,346 to 987,633
_RS05065
LU632_RS05070: LU632_RS05070 - IS481 family transposase, at 987,690 to 988,730
_RS05070
LU632_RS05075: LU632_RS05075 - hypothetical protein, at 989,056 to 989,271
_RS05075
LU632_RS05080: LU632_RS05080 - IS91 family transposase, at 989,249 to 990,280
_RS05080
Position (kb) 987
988
989 Strain fitness (log2 ratio) -1
0
1
2 at 986.703 kb on - strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.796 kb on + strand, within LU632_RS05060 at 986.806 kb on - strand, within LU632_RS05060 at 986.823 kb on + strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 986.965 kb on - strand, within LU632_RS05060 at 987.073 kb on + strand, within LU632_RS05060 at 987.074 kb on - strand, within LU632_RS05060 at 987.128 kb on + strand, within LU632_RS05060 at 987.129 kb on - strand, within LU632_RS05060 at 987.144 kb on + strand, within LU632_RS05060 at 987.145 kb on - strand, within LU632_RS05060 at 987.149 kb on + strand, within LU632_RS05060 at 987.150 kb on - strand, within LU632_RS05060 at 987.192 kb on - strand, within LU632_RS05060 at 987.197 kb on - strand, within LU632_RS05060 at 987.202 kb on + strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.203 kb on - strand, within LU632_RS05060 at 987.228 kb on + strand, within LU632_RS05060 at 987.229 kb on - strand, within LU632_RS05060 at 987.344 kb on - strand at 987.351 kb on - strand at 987.356 kb on + strand at 987.375 kb on - strand, within LU632_RS05065 at 987.375 kb on - strand, within LU632_RS05065 at 987.638 kb on - strand at 988.859 kb on + strand at 988.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 986,703 - LU632_RS05060 0.39 -0.2 986,796 + LU632_RS05060 0.48 -1.6 986,796 + LU632_RS05060 0.48 -1.7 986,806 - LU632_RS05060 0.49 +0.0 986,823 + LU632_RS05060 0.51 -0.1 986,965 - LU632_RS05060 0.64 -0.2 986,965 - LU632_RS05060 0.64 +0.3 987,073 + LU632_RS05060 0.74 +0.7 987,074 - LU632_RS05060 0.74 +0.4 987,128 + LU632_RS05060 0.79 -1.3 987,129 - LU632_RS05060 0.79 -0.0 987,144 + LU632_RS05060 0.81 -0.1 987,145 - LU632_RS05060 0.81 -0.8 987,149 + LU632_RS05060 0.81 +0.1 987,150 - LU632_RS05060 0.81 +1.5 987,192 - LU632_RS05060 0.85 -0.8 987,197 - LU632_RS05060 0.86 -0.4 987,202 + LU632_RS05060 0.86 -1.7 987,203 - LU632_RS05060 0.86 -0.1 987,203 - LU632_RS05060 0.86 -0.8 987,228 + LU632_RS05060 0.89 -0.0 987,229 - LU632_RS05060 0.89 +0.1 987,344 - -0.8 987,351 - +1.2 987,356 + +2.0 987,375 - LU632_RS05065 0.10 -0.2 987,375 - LU632_RS05065 0.10 -0.1 987,638 - -0.5 988,859 + +0.8 988,920 - +2.4
Or see this region's nucleotide sequence