Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05040 and LU632_RS05045 overlap by 4 nucleotides LU632_RS05045 and LU632_RS05050 are separated by 127 nucleotides
LU632_RS05040: LU632_RS05040 - conjugative transfer ATPase, at 978,417 to 981,281
_RS05040
LU632_RS05045: LU632_RS05045 - acetyltransferase, at 981,278 to 981,660
_RS05045
LU632_RS05050: LU632_RS05050 - DNA-binding protein, at 981,788 to 985,585
_RS05050
Position (kb) 981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 980.388 kb on - strand, within LU632_RS05040 at 980.388 kb on - strand, within LU632_RS05040 at 980.427 kb on + strand, within LU632_RS05040 at 980.428 kb on - strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.475 kb on + strand, within LU632_RS05040 at 980.476 kb on - strand, within LU632_RS05040 at 980.481 kb on - strand, within LU632_RS05040 at 980.520 kb on - strand, within LU632_RS05040 at 980.726 kb on + strand, within LU632_RS05040 at 980.732 kb on + strand, within LU632_RS05040 at 980.732 kb on + strand, within LU632_RS05040 at 980.751 kb on + strand, within LU632_RS05040 at 980.767 kb on + strand, within LU632_RS05040 at 980.767 kb on + strand, within LU632_RS05040 at 980.768 kb on - strand, within LU632_RS05040 at 980.768 kb on - strand, within LU632_RS05040 at 980.768 kb on - strand, within LU632_RS05040 at 980.792 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.823 kb on + strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.824 kb on - strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 980.825 kb on + strand, within LU632_RS05040 at 981.051 kb on + strand at 981.051 kb on + strand at 981.052 kb on - strand at 981.052 kb on - strand at 981.053 kb on + strand at 981.054 kb on - strand at 981.054 kb on - strand at 981.080 kb on + strand at 981.081 kb on - strand at 981.118 kb on - strand at 981.183 kb on + strand at 981.183 kb on + strand at 981.184 kb on - strand at 981.184 kb on - strand at 981.189 kb on - strand at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.525 kb on + strand, within LU632_RS05045 at 981.526 kb on - strand, within LU632_RS05045 at 981.574 kb on + strand, within LU632_RS05045 at 981.575 kb on - strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.592 kb on + strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.593 kb on - strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.594 kb on + strand, within LU632_RS05045 at 981.595 kb on - strand, within LU632_RS05045 at 981.649 kb on - strand at 981.649 kb on - strand at 981.649 kb on - strand at 981.650 kb on + strand at 981.650 kb on + strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.651 kb on - strand at 981.659 kb on - strand at 981.796 kb on - strand at 981.807 kb on + strand at 981.807 kb on + strand at 981.808 kb on - strand at 981.968 kb on - strand at 982.003 kb on + strand at 982.318 kb on + strand, within LU632_RS05050
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 980,388 - LU632_RS05040 0.69 +1.8 980,388 - LU632_RS05040 0.69 -0.4 980,427 + LU632_RS05040 0.70 +0.3 980,428 - LU632_RS05040 0.70 -0.1 980,475 + LU632_RS05040 0.72 -0.8 980,475 + LU632_RS05040 0.72 +0.2 980,475 + LU632_RS05040 0.72 +0.7 980,475 + LU632_RS05040 0.72 -0.1 980,476 - LU632_RS05040 0.72 -0.9 980,481 - LU632_RS05040 0.72 -1.3 980,520 - LU632_RS05040 0.73 +0.1 980,726 + LU632_RS05040 0.81 +2.1 980,732 + LU632_RS05040 0.81 -0.7 980,732 + LU632_RS05040 0.81 +0.5 980,751 + LU632_RS05040 0.81 +0.3 980,767 + LU632_RS05040 0.82 -0.7 980,767 + LU632_RS05040 0.82 -0.3 980,768 - LU632_RS05040 0.82 -1.7 980,768 - LU632_RS05040 0.82 +0.7 980,768 - LU632_RS05040 0.82 +0.3 980,792 + LU632_RS05040 0.83 +1.6 980,823 + LU632_RS05040 0.84 -1.5 980,823 + LU632_RS05040 0.84 +0.9 980,824 - LU632_RS05040 0.84 +2.2 980,824 - LU632_RS05040 0.84 +0.5 980,824 - LU632_RS05040 0.84 -0.1 980,825 + LU632_RS05040 0.84 +0.8 980,825 + LU632_RS05040 0.84 -0.6 981,051 + +0.5 981,051 + +1.5 981,052 - +0.2 981,052 - +1.2 981,053 + -1.2 981,054 - -0.5 981,054 - -0.2 981,080 + -0.1 981,081 - -0.6 981,118 - +1.0 981,183 + -0.2 981,183 + -1.0 981,184 - -0.8 981,184 - -1.3 981,189 - +1.1 981,525 + LU632_RS05045 0.64 -2.3 981,525 + LU632_RS05045 0.64 -2.1 981,525 + LU632_RS05045 0.64 +0.7 981,526 - LU632_RS05045 0.65 +1.0 981,574 + LU632_RS05045 0.77 -0.5 981,575 - LU632_RS05045 0.78 +0.2 981,592 + LU632_RS05045 0.82 +0.9 981,592 + LU632_RS05045 0.82 +0.5 981,592 + LU632_RS05045 0.82 +0.6 981,593 - LU632_RS05045 0.82 -0.7 981,593 - LU632_RS05045 0.82 -3.5 981,593 - LU632_RS05045 0.82 -0.8 981,594 + LU632_RS05045 0.83 -1.2 981,594 + LU632_RS05045 0.83 -1.1 981,595 - LU632_RS05045 0.83 -0.5 981,649 - -0.4 981,649 - -0.7 981,649 - -0.8 981,650 + -0.5 981,650 + +0.8 981,651 - +0.4 981,651 - -1.1 981,651 - -0.6 981,659 - +1.3 981,796 - +0.7 981,807 + +1.0 981,807 + -1.2 981,808 - +1.3 981,968 - -0.1 982,003 + +0.6 982,318 + LU632_RS05050 0.14 +2.0
Or see this region's nucleotide sequence