Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02255 and LU632_RS02260 are separated by 83 nucleotides LU632_RS02260 and LU632_RS02265 are separated by 123 nucleotides LU632_RS02265 and LU632_RS02270 are separated by 812 nucleotides
LU632_RS02255: LU632_RS02255 - UPF0149 family protein, at 446,109 to 446,684
_RS02255
LU632_RS02260: LU632_RS02260 - pirin family protein, at 446,768 to 447,472
_RS02260
LU632_RS02265: LU632_RS02265 - LysR family transcriptional regulator, at 447,596 to 448,498
_RS02265
LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604
_RS02270
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 446.712 kb on + strand at 446.712 kb on - strand at 446.740 kb on - strand at 446.799 kb on - strand at 446.842 kb on + strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.864 kb on - strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.891 kb on + strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.922 kb on - strand, within LU632_RS02260 at 446.925 kb on + strand, within LU632_RS02260 at 446.926 kb on - strand, within LU632_RS02260 at 446.950 kb on + strand, within LU632_RS02260 at 446.972 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.011 kb on + strand, within LU632_RS02260 at 447.122 kb on + strand, within LU632_RS02260 at 447.176 kb on + strand, within LU632_RS02260 at 447.297 kb on + strand, within LU632_RS02260 at 447.343 kb on + strand, within LU632_RS02260 at 447.363 kb on + strand, within LU632_RS02260 at 447.387 kb on + strand, within LU632_RS02260 at 447.506 kb on + strand at 447.507 kb on - strand at 447.511 kb on + strand at 447.511 kb on + strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.512 kb on - strand at 447.554 kb on + strand at 447.714 kb on - strand, within LU632_RS02265 at 447.714 kb on - strand, within LU632_RS02265 at 447.715 kb on + strand, within LU632_RS02265 at 447.785 kb on - strand, within LU632_RS02265 at 447.975 kb on + strand, within LU632_RS02265 at 448.102 kb on + strand, within LU632_RS02265 at 448.116 kb on - strand, within LU632_RS02265 at 448.180 kb on - strand, within LU632_RS02265 at 448.325 kb on - strand, within LU632_RS02265 at 448.388 kb on + strand, within LU632_RS02265 at 448.389 kb on - strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.390 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.396 kb on + strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.397 kb on - strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.401 kb on + strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.402 kb on - strand, within LU632_RS02265 at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.408 kb on + strand at 448.409 kb on - strand at 448.409 kb on - strand at 448.411 kb on + strand at 448.412 kb on - strand at 448.477 kb on - strand at 448.500 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.528 kb on + strand at 448.529 kb on - strand at 448.584 kb on + strand at 448.591 kb on - strand at 448.622 kb on + strand at 448.623 kb on - strand at 448.640 kb on - strand at 448.664 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.698 kb on - strand at 448.728 kb on - strand at 448.849 kb on - strand at 448.850 kb on + strand at 448.876 kb on - strand at 448.899 kb on - strand at 448.994 kb on + strand at 449.280 kb on - strand at 449.341 kb on - strand, within LU632_RS02270 at 449.408 kb on + strand, within LU632_RS02270
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 446,712 + +0.2 446,712 - -3.7 446,740 - +0.8 446,799 - +2.0 446,842 + LU632_RS02260 0.10 -0.0 446,864 - LU632_RS02260 0.14 -1.0 446,864 - LU632_RS02260 0.14 +2.2 446,864 - LU632_RS02260 0.14 +0.3 446,891 + LU632_RS02260 0.17 -0.2 446,891 + LU632_RS02260 0.17 -0.5 446,922 - LU632_RS02260 0.22 -1.1 446,922 - LU632_RS02260 0.22 -0.5 446,925 + LU632_RS02260 0.22 -0.1 446,926 - LU632_RS02260 0.22 -0.7 446,950 + LU632_RS02260 0.26 -1.2 446,972 + LU632_RS02260 0.29 -0.4 447,011 + LU632_RS02260 0.34 +0.1 447,011 + LU632_RS02260 0.34 -0.4 447,011 + LU632_RS02260 0.34 +0.7 447,122 + LU632_RS02260 0.50 +4.3 447,176 + LU632_RS02260 0.58 +0.1 447,297 + LU632_RS02260 0.75 -0.3 447,343 + LU632_RS02260 0.82 +0.6 447,363 + LU632_RS02260 0.84 +1.4 447,387 + LU632_RS02260 0.88 -0.3 447,506 + -0.5 447,507 - +0.1 447,511 + +0.2 447,511 + +1.5 447,512 - +0.2 447,512 - -1.2 447,512 - -1.1 447,554 + -1.2 447,714 - LU632_RS02265 0.13 +1.6 447,714 - LU632_RS02265 0.13 +1.1 447,715 + LU632_RS02265 0.13 +0.6 447,785 - LU632_RS02265 0.21 -0.0 447,975 + LU632_RS02265 0.42 +0.6 448,102 + LU632_RS02265 0.56 +0.7 448,116 - LU632_RS02265 0.58 -2.7 448,180 - LU632_RS02265 0.65 -1.5 448,325 - LU632_RS02265 0.81 -2.4 448,388 + LU632_RS02265 0.88 +1.2 448,389 - LU632_RS02265 0.88 -1.5 448,390 + LU632_RS02265 0.88 +0.6 448,390 + LU632_RS02265 0.88 -0.2 448,390 + LU632_RS02265 0.88 +0.4 448,390 + LU632_RS02265 0.88 +1.4 448,390 + LU632_RS02265 0.88 -0.7 448,396 + LU632_RS02265 0.89 -2.0 448,396 + LU632_RS02265 0.89 -0.4 448,397 - LU632_RS02265 0.89 +0.3 448,397 - LU632_RS02265 0.89 +1.3 448,401 + LU632_RS02265 0.89 +1.9 448,401 + LU632_RS02265 0.89 +0.3 448,402 - LU632_RS02265 0.89 +1.5 448,402 - LU632_RS02265 0.89 +0.6 448,408 + -0.1 448,408 + +0.3 448,408 + +1.2 448,408 + +0.2 448,408 + +0.2 448,409 - +0.0 448,409 - -0.8 448,411 + -0.4 448,412 - -2.3 448,477 - +0.2 448,500 + -0.9 448,528 + +0.5 448,528 + +0.9 448,528 + -0.1 448,529 - +2.7 448,584 + +0.0 448,591 - -1.0 448,622 + -1.4 448,623 - -0.1 448,640 - -0.8 448,664 - -1.0 448,698 - -0.6 448,698 - -1.4 448,698 - +1.1 448,728 - -0.7 448,849 - -0.8 448,850 + -1.7 448,876 - +0.3 448,899 - +0.0 448,994 + -0.7 449,280 - -0.7 449,341 - LU632_RS02270 0.10 +0.6 449,408 + LU632_RS02270 0.33 -0.2
Or see this region's nucleotide sequence