Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01530 and LU632_RS01535 are separated by 72 nucleotides LU632_RS01535 and LU632_RS01540 overlap by 1 nucleotides LU632_RS01540 and LU632_RS01545 overlap by 35 nucleotides LU632_RS01545 and LU632_RS01550 are separated by 55 nucleotides LU632_RS01550 and LU632_RS01555 overlap by 4 nucleotides
LU632_RS01530: LU632_RS01530 - hypothetical protein, at 308,868 to 309,110
_RS01530
LU632_RS01535: LU632_RS01535 - hypothetical protein, at 309,183 to 309,566
_RS01535
LU632_RS01540: LU632_RS01540 - replication endonuclease, at 309,566 to 312,061
_RS01540
LU632_RS01545: LU632_RS01545 - hypothetical protein, at 312,027 to 312,452
_RS01545
LU632_RS01550: LU632_RS01550 - type II toxin-antitoxin system HicA family toxin, at 312,508 to 312,783
_RS01550
LU632_RS01555: LU632_RS01555 - type II toxin-antitoxin system HicB family antitoxin, at 312,780 to 313,139
_RS01555
Position (kb) 309
310
311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 308.592 kb on + strand at 308.593 kb on - strand at 308.611 kb on + strand at 308.611 kb on + strand at 308.612 kb on - strand at 308.613 kb on + strand at 308.614 kb on - strand at 308.667 kb on + strand at 308.668 kb on - strand at 308.728 kb on - strand at 308.810 kb on + strand at 308.882 kb on + strand at 308.883 kb on - strand at 308.883 kb on - strand at 308.883 kb on - strand at 309.031 kb on - strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.051 kb on + strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.052 kb on - strand, within LU632_RS01530 at 309.075 kb on - strand, within LU632_RS01530 at 309.203 kb on + strand at 309.255 kb on + strand, within LU632_RS01535 at 309.417 kb on + strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.418 kb on - strand, within LU632_RS01535 at 309.564 kb on + strand at 309.564 kb on + strand at 309.565 kb on - strand at 309.671 kb on + strand at 309.671 kb on + strand at 309.674 kb on + strand at 309.675 kb on - strand at 309.675 kb on - strand at 309.675 kb on - strand at 309.683 kb on - strand at 309.749 kb on - strand at 309.749 kb on - strand at 309.773 kb on - strand at 309.838 kb on + strand, within LU632_RS01540 at 309.872 kb on + strand, within LU632_RS01540 at 310.046 kb on + strand, within LU632_RS01540 at 310.046 kb on + strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.047 kb on - strand, within LU632_RS01540 at 310.184 kb on - strand, within LU632_RS01540 at 310.236 kb on + strand, within LU632_RS01540 at 310.237 kb on - strand, within LU632_RS01540 at 310.443 kb on + strand, within LU632_RS01540 at 310.563 kb on - strand, within LU632_RS01540 at 310.563 kb on - strand, within LU632_RS01540 at 310.565 kb on + strand, within LU632_RS01540 at 310.804 kb on + strand, within LU632_RS01540 at 310.921 kb on + strand, within LU632_RS01540 at 310.922 kb on - strand, within LU632_RS01540 at 310.922 kb on - strand, within LU632_RS01540 at 310.973 kb on - strand, within LU632_RS01540 at 311.000 kb on - strand, within LU632_RS01540 at 311.000 kb on - strand, within LU632_RS01540 at 311.030 kb on + strand, within LU632_RS01540 at 311.031 kb on - strand, within LU632_RS01540 at 311.031 kb on - strand, within LU632_RS01540 at 311.031 kb on - strand, within LU632_RS01540 at 311.042 kb on + strand, within LU632_RS01540 at 311.042 kb on + strand, within LU632_RS01540 at 311.042 kb on + strand, within LU632_RS01540 at 311.042 kb on + strand, within LU632_RS01540 at 311.042 kb on + strand, within LU632_RS01540 at 311.042 kb on + strand, within LU632_RS01540 at 311.043 kb on - strand, within LU632_RS01540 at 311.043 kb on - strand, within LU632_RS01540 at 311.043 kb on - strand, within LU632_RS01540 at 311.043 kb on - strand, within LU632_RS01540 at 311.043 kb on - strand, within LU632_RS01540 at 311.043 kb on - strand, within LU632_RS01540 at 311.044 kb on + strand, within LU632_RS01540 at 311.045 kb on - strand, within LU632_RS01540 at 311.046 kb on + strand, within LU632_RS01540 at 311.046 kb on + strand, within LU632_RS01540 at 311.046 kb on + strand, within LU632_RS01540 at 311.046 kb on + strand, within LU632_RS01540 at 311.047 kb on - strand, within LU632_RS01540 at 311.047 kb on - strand, within LU632_RS01540 at 311.047 kb on - strand, within LU632_RS01540 at 311.047 kb on - strand, within LU632_RS01540 at 311.051 kb on - strand, within LU632_RS01540 at 311.308 kb on - strand, within LU632_RS01540 at 311.308 kb on - strand, within LU632_RS01540 at 311.342 kb on + strand, within LU632_RS01540 at 311.342 kb on + strand, within LU632_RS01540 at 311.342 kb on + strand, within LU632_RS01540 at 311.342 kb on + strand, within LU632_RS01540 at 311.343 kb on - strand, within LU632_RS01540 at 311.343 kb on - strand, within LU632_RS01540 at 311.343 kb on - strand, within LU632_RS01540 at 311.344 kb on + strand, within LU632_RS01540 at 311.345 kb on - strand, within LU632_RS01540 at 311.445 kb on + strand, within LU632_RS01540 at 311.618 kb on - strand, within LU632_RS01540 at 311.651 kb on - strand, within LU632_RS01540 at 311.656 kb on + strand, within LU632_RS01540 at 311.856 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.858 kb on + strand at 311.859 kb on - strand at 311.859 kb on - strand at 311.862 kb on + strand at 311.862 kb on + strand at 311.862 kb on + strand at 311.862 kb on + strand at 311.863 kb on - strand at 311.863 kb on - strand at 311.908 kb on + strand at 311.908 kb on + strand at 311.909 kb on - strand at 311.909 kb on - strand at 312.153 kb on + strand, within LU632_RS01545 at 312.154 kb on - strand, within LU632_RS01545 at 312.154 kb on - strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.155 kb on + strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.156 kb on - strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.157 kb on + strand, within LU632_RS01545 at 312.158 kb on - strand, within LU632_RS01545 at 312.158 kb on - strand, within LU632_RS01545 at 312.158 kb on - strand, within LU632_RS01545 at 312.199 kb on + strand, within LU632_RS01545 at 312.199 kb on + strand, within LU632_RS01545 at 312.199 kb on + strand, within LU632_RS01545 at 312.226 kb on + strand, within LU632_RS01545 at 312.354 kb on + strand, within LU632_RS01545 at 312.377 kb on + strand, within LU632_RS01545 at 312.377 kb on + strand, within LU632_RS01545 at 312.377 kb on + strand, within LU632_RS01545 at 312.378 kb on - strand, within LU632_RS01545 at 312.378 kb on - strand, within LU632_RS01545 at 312.378 kb on - strand, within LU632_RS01545 at 312.428 kb on + strand at 312.472 kb on - strand at 312.639 kb on + strand, within LU632_RS01550 at 312.803 kb on + strand at 312.840 kb on + strand, within LU632_RS01555 at 312.914 kb on + strand, within LU632_RS01555 at 312.971 kb on + strand, within LU632_RS01555 at 312.971 kb on + strand, within LU632_RS01555 at 312.985 kb on + strand, within LU632_RS01555 at 312.985 kb on + strand, within LU632_RS01555 at 312.985 kb on + strand, within LU632_RS01555 at 312.994 kb on - strand, within LU632_RS01555
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 308,592 + +1.8 308,593 - -1.2 308,611 + +0.6 308,611 + +0.1 308,612 - -0.4 308,613 + +0.2 308,614 - +0.7 308,667 + -0.3 308,668 - -0.2 308,728 - +1.0 308,810 + +1.0 308,882 + +0.4 308,883 - +0.6 308,883 - +0.0 308,883 - +0.2 309,031 - LU632_RS01530 0.67 -2.8 309,051 + LU632_RS01530 0.75 -1.2 309,051 + LU632_RS01530 0.75 +0.3 309,051 + LU632_RS01530 0.75 +0.4 309,052 - LU632_RS01530 0.76 -1.0 309,052 - LU632_RS01530 0.76 -0.7 309,075 - LU632_RS01530 0.85 +2.3 309,203 + -1.5 309,255 + LU632_RS01535 0.19 -0.2 309,417 + LU632_RS01535 0.61 -0.3 309,418 - LU632_RS01535 0.61 +0.5 309,418 - LU632_RS01535 0.61 -0.5 309,418 - LU632_RS01535 0.61 +0.3 309,418 - LU632_RS01535 0.61 -1.3 309,564 + -1.0 309,564 + -1.0 309,565 - +0.6 309,671 + -1.0 309,671 + -1.2 309,674 + -0.5 309,675 - -2.3 309,675 - +0.1 309,675 - -0.7 309,683 - +0.6 309,749 - +0.0 309,749 - -1.5 309,773 - +0.3 309,838 + LU632_RS01540 0.11 +0.3 309,872 + LU632_RS01540 0.12 +1.8 310,046 + LU632_RS01540 0.19 -0.2 310,046 + LU632_RS01540 0.19 +1.0 310,047 - LU632_RS01540 0.19 +1.6 310,047 - LU632_RS01540 0.19 +1.7 310,047 - LU632_RS01540 0.19 -0.6 310,184 - LU632_RS01540 0.25 +0.2 310,236 + LU632_RS01540 0.27 +0.5 310,237 - LU632_RS01540 0.27 -1.5 310,443 + LU632_RS01540 0.35 -1.4 310,563 - LU632_RS01540 0.40 +0.4 310,563 - LU632_RS01540 0.40 -1.2 310,565 + LU632_RS01540 0.40 -0.4 310,804 + LU632_RS01540 0.50 -0.5 310,921 + LU632_RS01540 0.54 +0.2 310,922 - LU632_RS01540 0.54 -0.1 310,922 - LU632_RS01540 0.54 +2.1 310,973 - LU632_RS01540 0.56 +0.2 311,000 - LU632_RS01540 0.57 +0.8 311,000 - LU632_RS01540 0.57 -0.3 311,030 + LU632_RS01540 0.59 +0.3 311,031 - LU632_RS01540 0.59 +1.0 311,031 - LU632_RS01540 0.59 -0.1 311,031 - LU632_RS01540 0.59 -1.8 311,042 + LU632_RS01540 0.59 -2.2 311,042 + LU632_RS01540 0.59 -2.1 311,042 + LU632_RS01540 0.59 +0.1 311,042 + LU632_RS01540 0.59 +1.6 311,042 + LU632_RS01540 0.59 -0.7 311,042 + LU632_RS01540 0.59 +0.4 311,043 - LU632_RS01540 0.59 -0.1 311,043 - LU632_RS01540 0.59 +1.4 311,043 - LU632_RS01540 0.59 -0.7 311,043 - LU632_RS01540 0.59 -1.9 311,043 - LU632_RS01540 0.59 +1.3 311,043 - LU632_RS01540 0.59 +0.1 311,044 + LU632_RS01540 0.59 +1.6 311,045 - LU632_RS01540 0.59 +0.2 311,046 + LU632_RS01540 0.59 -0.1 311,046 + LU632_RS01540 0.59 -0.7 311,046 + LU632_RS01540 0.59 -0.2 311,046 + LU632_RS01540 0.59 +0.5 311,047 - LU632_RS01540 0.59 +0.3 311,047 - LU632_RS01540 0.59 -0.9 311,047 - LU632_RS01540 0.59 -0.5 311,047 - LU632_RS01540 0.59 +0.1 311,051 - LU632_RS01540 0.59 -1.5 311,308 - LU632_RS01540 0.70 -0.8 311,308 - LU632_RS01540 0.70 -0.9 311,342 + LU632_RS01540 0.71 +0.3 311,342 + LU632_RS01540 0.71 +0.3 311,342 + LU632_RS01540 0.71 +0.7 311,342 + LU632_RS01540 0.71 +1.1 311,343 - LU632_RS01540 0.71 -1.2 311,343 - LU632_RS01540 0.71 +0.6 311,343 - LU632_RS01540 0.71 -0.1 311,344 + LU632_RS01540 0.71 +1.3 311,345 - LU632_RS01540 0.71 +1.1 311,445 + LU632_RS01540 0.75 +1.4 311,618 - LU632_RS01540 0.82 +1.3 311,651 - LU632_RS01540 0.84 -2.4 311,656 + LU632_RS01540 0.84 +0.6 311,856 + +0.2 311,858 + +0.3 311,858 + -0.5 311,858 + -0.5 311,858 + -0.7 311,858 + -1.0 311,858 + +0.0 311,858 + +1.0 311,859 - -1.3 311,859 - +0.2 311,862 + +1.7 311,862 + +2.2 311,862 + -0.7 311,862 + -0.1 311,863 - -0.2 311,863 - -1.0 311,908 + -1.6 311,908 + +2.2 311,909 - +1.9 311,909 - +1.3 312,153 + LU632_RS01545 0.30 -0.8 312,154 - LU632_RS01545 0.30 -0.1 312,154 - LU632_RS01545 0.30 -2.7 312,155 + LU632_RS01545 0.30 +0.1 312,155 + LU632_RS01545 0.30 -0.3 312,155 + LU632_RS01545 0.30 -0.1 312,155 + LU632_RS01545 0.30 +0.3 312,155 + LU632_RS01545 0.30 -0.4 312,155 + LU632_RS01545 0.30 -0.7 312,155 + LU632_RS01545 0.30 +0.3 312,156 - LU632_RS01545 0.30 +0.1 312,156 - LU632_RS01545 0.30 -1.5 312,156 - LU632_RS01545 0.30 -2.5 312,156 - LU632_RS01545 0.30 -1.2 312,156 - LU632_RS01545 0.30 -1.3 312,157 + LU632_RS01545 0.31 -1.2 312,157 + LU632_RS01545 0.31 -0.5 312,157 + LU632_RS01545 0.31 +0.3 312,157 + LU632_RS01545 0.31 +3.3 312,157 + LU632_RS01545 0.31 +0.1 312,157 + LU632_RS01545 0.31 +0.2 312,158 - LU632_RS01545 0.31 -0.2 312,158 - LU632_RS01545 0.31 +0.6 312,158 - LU632_RS01545 0.31 +0.3 312,199 + LU632_RS01545 0.40 -0.7 312,199 + LU632_RS01545 0.40 +1.0 312,199 + LU632_RS01545 0.40 +0.2 312,226 + LU632_RS01545 0.47 -0.2 312,354 + LU632_RS01545 0.77 +1.8 312,377 + LU632_RS01545 0.82 +0.6 312,377 + LU632_RS01545 0.82 -1.0 312,377 + LU632_RS01545 0.82 -1.2 312,378 - LU632_RS01545 0.82 -1.6 312,378 - LU632_RS01545 0.82 +0.3 312,378 - LU632_RS01545 0.82 -0.2 312,428 + +0.1 312,472 - -1.3 312,639 + LU632_RS01550 0.47 +0.8 312,803 + -1.1 312,840 + LU632_RS01555 0.17 -0.1 312,914 + LU632_RS01555 0.37 -0.5 312,971 + LU632_RS01555 0.53 +0.7 312,971 + LU632_RS01555 0.53 +1.9 312,985 + LU632_RS01555 0.57 +0.5 312,985 + LU632_RS01555 0.57 +1.2 312,985 + LU632_RS01555 0.57 -0.7 312,994 - LU632_RS01555 0.59 +2.6
Or see this region's nucleotide sequence