Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00390

Experiment: plant=Melon; plant sample=MP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=MP1; plant location=NA
80,159	+		LU632_RS00380	0.76	+0.2
80,160	-		LU632_RS00380	0.77	-0.5
80,192	+		LU632_RS00380	0.81	+2.7
80,252	-		LU632_RS00380	0.88	+0.9
80,279	+				+0.7
80,326	+				+0.1
80,326	+				-0.7
80,327	-				+2.0
80,441	+				+0.2
80,441	+				-1.3
80,442	-				-0.5
80,442	-				-1.7
80,442	-				+0.7
80,442	-				-1.4
80,487	-				-0.6
80,487	-				-0.5
80,491	-				+0.1
80,583	+		LU632_RS00385	0.16	+1.0
80,905	+				+0.3
80,906	-				+0.2
80,906	-				+1.1
80,921	+				+1.6
81,031	-				-0.7
81,125	+		LU632_RS00390	0.13	-0.3
81,126	-		LU632_RS00390	0.13	+0.7
81,136	-		LU632_RS00390	0.14	+1.4
81,159	+		LU632_RS00390	0.17	-2.8
81,384	-		LU632_RS00390	0.41	-0.3
81,539	+		LU632_RS00390	0.57	+1.9
81,539	+		LU632_RS00390	0.57	+3.1
81,540	-		LU632_RS00390	0.57	-0.3
81,540	-		LU632_RS00390	0.57	+1.2
81,540	-		LU632_RS00390	0.57	-0.5
81,545	+		LU632_RS00390	0.58	-0.9
81,546	-		LU632_RS00390	0.58	-0.5
81,552	-		LU632_RS00390	0.59	-0.8
81,552	-		LU632_RS00390	0.59	-2.2
81,558	+		LU632_RS00390	0.59	+0.2
81,559	-		LU632_RS00390	0.59	-0.1
81,571	+		LU632_RS00390	0.61	-0.8
81,571	+		LU632_RS00390	0.61	+0.1
81,671	+		LU632_RS00390	0.71	-0.6
81,674	-		LU632_RS00390	0.72	-0.3
81,688	-		LU632_RS00390	0.73	+1.3
81,900	+				-0.6
81,900	+				-0.1
81,921	+				+2.9
81,978	+				-0.1
82,148	+				+1.4
82,225	-				+1.0
82,225	-				-0.3
82,260	+				-0.3
82,261	-				-0.1
82,261	-				-1.8
82,416	+		LU632_RS00395	0.10	-0.7
82,471	-		LU632_RS00395	0.13	+1.7
82,481	+		LU632_RS00395	0.13	+0.7
82,481	+		LU632_RS00395	0.13	+0.1
82,514	+		LU632_RS00395	0.15	+0.1
82,514	+		LU632_RS00395	0.15	-1.9
82,515	-		LU632_RS00395	0.15	-0.5
82,515	-		LU632_RS00395	0.15	-1.3
82,519	-		LU632_RS00395	0.15	+0.7
82,581	+		LU632_RS00395	0.18	+1.3
82,582	-		LU632_RS00395	0.18	-0.4
82,594	-		LU632_RS00395	0.19	-1.3
82,659	+		LU632_RS00395	0.22	+1.7
82,662	+		LU632_RS00395	0.22	+1.7
82,662	+		LU632_RS00395	0.22	-0.8
82,662	+		LU632_RS00395	0.22	+0.1
82,683	+		LU632_RS00395	0.23	+0.3
82,684	-		LU632_RS00395	0.23	+1.0