Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05890

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05880 and ABIE41_RS05885 overlap by 14 nucleotidesABIE41_RS05885 and ABIE41_RS05890 are separated by 170 nucleotidesABIE41_RS05890 and ABIE41_RS05895 are separated by 127 nucleotides ABIE41_RS05880: ABIE41_RS05880 - nitrile hydratase subunit beta, at 1,210,151 to 1,210,810 _RS05880 ABIE41_RS05885: ABIE41_RS05885 - nitrile hydratase accessory protein, at 1,210,797 to 1,211,180 _RS05885 ABIE41_RS05890: ABIE41_RS05890 - aminopeptidase, at 1,211,351 to 1,212,607 _RS05890 ABIE41_RS05895: ABIE41_RS05895 - diaminopropionate ammonia-lyase, at 1,212,735 to 1,213,910 _RS05895 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -2 -1 0 1 2at 1210.352 kb on + strand, within ABIE41_RS05880at 1210.352 kb on + strand, within ABIE41_RS05880at 1210.352 kb on + strand, within ABIE41_RS05880at 1210.352 kb on + strand, within ABIE41_RS05880at 1210.352 kb on + strand, within ABIE41_RS05880at 1210.353 kb on - strand, within ABIE41_RS05880at 1210.353 kb on - strand, within ABIE41_RS05880at 1210.353 kb on - strand, within ABIE41_RS05880at 1210.355 kb on + strand, within ABIE41_RS05880at 1210.355 kb on + strand, within ABIE41_RS05880at 1210.355 kb on + strand, within ABIE41_RS05880at 1210.514 kb on + strand, within ABIE41_RS05880at 1210.709 kb on + strand, within ABIE41_RS05880at 1210.710 kb on - strand, within ABIE41_RS05880at 1210.710 kb on - strand, within ABIE41_RS05880at 1210.793 kb on + strandat 1210.793 kb on + strandat 1210.793 kb on + strandat 1210.793 kb on + strandat 1210.793 kb on + strandat 1210.793 kb on + strandat 1210.793 kb on + strandat 1210.793 kb on + strandat 1210.794 kb on - strandat 1210.794 kb on - strandat 1210.794 kb on - strandat 1210.794 kb on - strandat 1210.794 kb on - strandat 1210.794 kb on - strandat 1211.016 kb on + strand, within ABIE41_RS05885at 1211.016 kb on + strand, within ABIE41_RS05885at 1211.017 kb on - strand, within ABIE41_RS05885at 1211.179 kb on - strandat 1211.256 kb on + strandat 1211.341 kb on + strandat 1211.341 kb on + strandat 1211.342 kb on - strandat 1211.342 kb on - strandat 1211.526 kb on + strand, within ABIE41_RS05890at 1211.526 kb on + strand, within ABIE41_RS05890at 1211.526 kb on + strand, within ABIE41_RS05890at 1211.716 kb on + strand, within ABIE41_RS05890at 1211.766 kb on + strand, within ABIE41_RS05890at 1211.767 kb on - strand, within ABIE41_RS05890at 1212.007 kb on + strand, within ABIE41_RS05890at 1212.141 kb on + strand, within ABIE41_RS05890at 1212.142 kb on - strand, within ABIE41_RS05890at 1212.198 kb on + strand, within ABIE41_RS05890at 1212.199 kb on - strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.370 kb on - strand, within ABIE41_RS05890at 1212.438 kb on + strand, within ABIE41_RS05890at 1212.438 kb on + strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.642 kb on - strandat 1212.820 kb on + strandat 1212.820 kb on + strandat 1212.821 kb on - strandat 1212.821 kb on - strandat 1212.821 kb on - strandat 1212.853 kb on - strand, within ABIE41_RS05895at 1212.853 kb on - strand, within ABIE41_RS05895at 1212.853 kb on - strand, within ABIE41_RS05895at 1212.853 kb on - strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.310 kb on + strand, within ABIE41_RS05895at 1213.311 kb on - strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.360 kb on - strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.362 kb on - strand, within ABIE41_RS05895at 1213.362 kb on - strand, within ABIE41_RS05895

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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1,210,352 + ABIE41_RS05880 0.30 -0.9
1,210,352 + ABIE41_RS05880 0.30 -0.9
1,210,352 + ABIE41_RS05880 0.30 -1.6
1,210,352 + ABIE41_RS05880 0.30 -0.0
1,210,352 + ABIE41_RS05880 0.30 -0.3
1,210,353 - ABIE41_RS05880 0.31 +0.4
1,210,353 - ABIE41_RS05880 0.31 -0.4
1,210,353 - ABIE41_RS05880 0.31 -0.0
1,210,355 + ABIE41_RS05880 0.31 -0.9
1,210,355 + ABIE41_RS05880 0.31 +0.0
1,210,355 + ABIE41_RS05880 0.31 -0.7
1,210,514 + ABIE41_RS05880 0.55 -0.1
1,210,709 + ABIE41_RS05880 0.85 +0.4
1,210,710 - ABIE41_RS05880 0.85 -0.3
1,210,710 - ABIE41_RS05880 0.85 +0.3
1,210,793 + +1.7
1,210,793 + +0.6
1,210,793 + -0.3
1,210,793 + -0.0
1,210,793 + -0.6
1,210,793 + -0.3
1,210,793 + -0.3
1,210,793 + -0.9
1,210,794 - -0.6
1,210,794 - -0.2
1,210,794 - +0.4
1,210,794 - -0.7
1,210,794 - -0.0
1,210,794 - +0.9
1,211,016 + ABIE41_RS05885 0.57 -1.5
1,211,016 + ABIE41_RS05885 0.57 -1.9
1,211,017 - ABIE41_RS05885 0.57 +0.1
1,211,179 - -0.8
1,211,256 + +0.0
1,211,341 + +1.0
1,211,341 + -0.1
1,211,342 - -0.4
1,211,342 - -1.1
1,211,526 + ABIE41_RS05890 0.14 -0.1
1,211,526 + ABIE41_RS05890 0.14 -0.0
1,211,526 + ABIE41_RS05890 0.14 -0.1
1,211,716 + ABIE41_RS05890 0.29 +0.0
1,211,766 + ABIE41_RS05890 0.33 -0.1
1,211,767 - ABIE41_RS05890 0.33 +0.2
1,212,007 + ABIE41_RS05890 0.52 -0.4
1,212,141 + ABIE41_RS05890 0.63 +0.1
1,212,142 - ABIE41_RS05890 0.63 +0.3
1,212,198 + ABIE41_RS05890 0.67 -0.0
1,212,199 - ABIE41_RS05890 0.67 +0.0
1,212,369 + ABIE41_RS05890 0.81 -0.1
1,212,369 + ABIE41_RS05890 0.81 -1.6
1,212,369 + ABIE41_RS05890 0.81 -0.2
1,212,369 + ABIE41_RS05890 0.81 -0.4
1,212,370 - ABIE41_RS05890 0.81 -0.2
1,212,438 + ABIE41_RS05890 0.86 +1.4
1,212,438 + ABIE41_RS05890 0.86 -0.3
1,212,439 - ABIE41_RS05890 0.87 -0.9
1,212,439 - ABIE41_RS05890 0.87 -0.4
1,212,439 - ABIE41_RS05890 0.87 +0.5
1,212,439 - ABIE41_RS05890 0.87 -0.3
1,212,641 + +1.0
1,212,641 + -0.8
1,212,641 + -0.1
1,212,641 + -2.7
1,212,641 + +0.4
1,212,642 - -1.0
1,212,820 + -0.2
1,212,820 + +0.4
1,212,821 - -0.7
1,212,821 - +1.0
1,212,821 - +0.4
1,212,853 - ABIE41_RS05895 0.10 +0.1
1,212,853 - ABIE41_RS05895 0.10 -0.6
1,212,853 - ABIE41_RS05895 0.10 +0.8
1,212,853 - ABIE41_RS05895 0.10 +0.2
1,212,975 + ABIE41_RS05895 0.20 +0.3
1,212,975 + ABIE41_RS05895 0.20 -0.4
1,212,975 + ABIE41_RS05895 0.20 -0.7
1,212,975 + ABIE41_RS05895 0.20 -0.1
1,212,975 + ABIE41_RS05895 0.20 -0.4
1,212,975 + ABIE41_RS05895 0.20 +1.3
1,212,976 - ABIE41_RS05895 0.20 +1.1
1,212,976 - ABIE41_RS05895 0.20 +0.1
1,212,976 - ABIE41_RS05895 0.20 -0.2
1,212,976 - ABIE41_RS05895 0.20 -0.2
1,212,976 - ABIE41_RS05895 0.20 -2.1
1,212,976 - ABIE41_RS05895 0.20 +0.5
1,212,976 - ABIE41_RS05895 0.20 -0.8
1,212,976 - ABIE41_RS05895 0.20 +0.7
1,213,245 + ABIE41_RS05895 0.43 -0.3
1,213,245 + ABIE41_RS05895 0.43 -0.9
1,213,245 + ABIE41_RS05895 0.43 -0.0
1,213,245 + ABIE41_RS05895 0.43 +0.5
1,213,246 - ABIE41_RS05895 0.43 -0.2
1,213,246 - ABIE41_RS05895 0.43 +0.0
1,213,246 - ABIE41_RS05895 0.43 -0.2
1,213,310 + ABIE41_RS05895 0.49 -0.4
1,213,311 - ABIE41_RS05895 0.49 -0.4
1,213,359 + ABIE41_RS05895 0.53 -0.7
1,213,359 + ABIE41_RS05895 0.53 +0.2
1,213,359 + ABIE41_RS05895 0.53 -0.2
1,213,359 + ABIE41_RS05895 0.53 -0.6
1,213,360 - ABIE41_RS05895 0.53 -1.5
1,213,361 + ABIE41_RS05895 0.53 +0.2
1,213,361 + ABIE41_RS05895 0.53 +2.3
1,213,361 + ABIE41_RS05895 0.53 +0.7
1,213,362 - ABIE41_RS05895 0.53 +0.6
1,213,362 - ABIE41_RS05895 0.53 -1.1

Or see this region's nucleotide sequence