Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02911 and ECD_02912 are separated by 115 nucleotides ECD_02912 and ECD_04362 are separated by 57 nucleotides ECD_04362 and ECD_02913 are separated by 261 nucleotides
ECD_02911: ECD_02911 - 4,5- DOPA-extradiol-dioxygenase, at 3,049,056 to 3,049,871
_02911
ECD_02912: ECD_02912 - zinc transporter, at 3,049,987 to 3,050,760
_02912
ECD_04362: ECD_04362 - hypothetical protein, at 3,050,818 to 3,050,988
_04362
ECD_02913: ECD_02913 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 3,051,250 to 3,051,903
_02913
Position (kb)
3050
3051 Strain fitness (log2 ratio)
-2
-1
0
1 at 3049.829 kb on + strand at 3049.829 kb on + strand at 3049.829 kb on + strand at 3049.830 kb on - strand at 3049.830 kb on - strand at 3049.830 kb on - strand at 3049.856 kb on + strand at 3049.861 kb on - strand at 3049.861 kb on - strand at 3049.861 kb on - strand at 3049.888 kb on + strand at 3049.888 kb on + strand at 3049.889 kb on - strand at 3049.973 kb on - strand at 3050.156 kb on + strand, within ECD_02912 at 3050.219 kb on - strand, within ECD_02912 at 3050.522 kb on + strand, within ECD_02912 at 3050.555 kb on + strand, within ECD_02912 at 3050.619 kb on + strand, within ECD_02912 at 3050.619 kb on + strand, within ECD_02912 at 3050.620 kb on - strand, within ECD_02912 at 3050.645 kb on + strand, within ECD_02912 at 3050.673 kb on + strand, within ECD_02912 at 3050.676 kb on + strand, within ECD_02912 at 3050.676 kb on + strand, within ECD_02912 at 3050.677 kb on - strand, within ECD_02912 at 3050.677 kb on - strand, within ECD_02912 at 3050.696 kb on + strand at 3050.696 kb on + strand at 3050.696 kb on + strand at 3050.696 kb on + strand at 3050.696 kb on + strand at 3050.699 kb on + strand at 3050.699 kb on + strand at 3050.699 kb on + strand at 3050.700 kb on - strand at 3050.700 kb on - strand at 3050.820 kb on - strand at 3050.820 kb on - strand at 3050.820 kb on - strand at 3050.851 kb on - strand, within ECD_04362 at 3050.858 kb on - strand, within ECD_04362 at 3051.003 kb on + strand at 3051.058 kb on + strand at 3051.058 kb on + strand at 3051.927 kb on - strand at 3051.953 kb on - strand at 3051.953 kb on - strand at 3051.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 3,049,829 + -0.3 3,049,829 + +0.5 3,049,829 + +0.1 3,049,830 - +0.0 3,049,830 - +0.1 3,049,830 - -0.1 3,049,856 + +0.8 3,049,861 - +0.7 3,049,861 - -0.0 3,049,861 - -0.1 3,049,888 + +0.3 3,049,888 + +0.6 3,049,889 - +1.0 3,049,973 - +0.4 3,050,156 + ECD_02912 0.22 +1.1 3,050,219 - ECD_02912 0.30 -1.2 3,050,522 + ECD_02912 0.69 -0.5 3,050,555 + ECD_02912 0.73 +0.5 3,050,619 + ECD_02912 0.82 +0.4 3,050,619 + ECD_02912 0.82 -0.1 3,050,620 - ECD_02912 0.82 +0.7 3,050,645 + ECD_02912 0.85 -2.7 3,050,673 + ECD_02912 0.89 +0.6 3,050,676 + ECD_02912 0.89 -0.7 3,050,676 + ECD_02912 0.89 +0.2 3,050,677 - ECD_02912 0.89 +0.8 3,050,677 - ECD_02912 0.89 +0.7 3,050,696 + +0.4 3,050,696 + -0.7 3,050,696 + -0.3 3,050,696 + +0.0 3,050,696 + +0.7 3,050,699 + +0.4 3,050,699 + +1.7 3,050,699 + -0.8 3,050,700 - +0.8 3,050,700 - +1.3 3,050,820 - -0.8 3,050,820 - +0.4 3,050,820 - -0.6 3,050,851 - ECD_04362 0.19 -0.2 3,050,858 - ECD_04362 0.23 -1.7 3,051,003 + -0.2 3,051,058 + +0.7 3,051,058 + +0.4 3,051,927 - +0.3 3,051,953 - -1.5 3,051,953 - -0.6 3,051,967 - +0.8
Or see this region's nucleotide sequence