Strain Fitness in Escherichia coli BL21 around ECD_04260

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04259 and ECD_04260 are separated by 79 nucleotidesECD_04260 and ECD_04261 are separated by 160 nucleotidesECD_04261 and ECD_04262 are separated by 31 nucleotides ECD_04259: ECD_04259 - phosphopentomutase, at 4,537,978 to 4,539,201 _04259 ECD_04260: ECD_04260 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase, at 4,539,281 to 4,540,000 _04260 ECD_04261: ECD_04261 - hypothetical protein, at 4,540,161 to 4,540,424 _04261 ECD_04262: ECD_04262 - lipoate-protein ligase A, at 4,540,456 to 4,541,472 _04262 Position (kb) 4539 4540 4541Strain fitness (log2 ratio) -2 -1 0 1at 4538.484 kb on + strand, within ECD_04259at 4538.593 kb on + strand, within ECD_04259at 4538.767 kb on + strand, within ECD_04259at 4538.859 kb on + strand, within ECD_04259at 4538.860 kb on - strand, within ECD_04259at 4538.929 kb on + strand, within ECD_04259at 4539.046 kb on - strand, within ECD_04259at 4539.298 kb on + strandat 4539.327 kb on + strandat 4539.362 kb on + strand, within ECD_04260at 4539.363 kb on - strand, within ECD_04260at 4539.363 kb on - strand, within ECD_04260at 4539.363 kb on - strand, within ECD_04260at 4539.364 kb on + strand, within ECD_04260at 4539.437 kb on + strand, within ECD_04260at 4539.438 kb on - strand, within ECD_04260at 4539.438 kb on - strand, within ECD_04260at 4539.577 kb on - strand, within ECD_04260at 4539.635 kb on - strand, within ECD_04260at 4539.761 kb on + strand, within ECD_04260at 4539.762 kb on - strand, within ECD_04260at 4539.835 kb on + strand, within ECD_04260at 4539.836 kb on - strand, within ECD_04260at 4539.998 kb on + strandat 4539.998 kb on + strandat 4539.999 kb on - strandat 4539.999 kb on - strandat 4540.070 kb on - strandat 4540.142 kb on + strandat 4540.254 kb on - strand, within ECD_04261at 4540.254 kb on - strand, within ECD_04261at 4540.282 kb on - strand, within ECD_04261at 4540.298 kb on + strand, within ECD_04261at 4540.384 kb on - strand, within ECD_04261at 4540.458 kb on - strandat 4540.458 kb on - strandat 4540.648 kb on - strand, within ECD_04262at 4540.839 kb on - strand, within ECD_04262at 4540.939 kb on - strand, within ECD_04262at 4540.939 kb on - strand, within ECD_04262at 4540.979 kb on + strand, within ECD_04262

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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4,538,484 + ECD_04259 0.41 -0.4
4,538,593 + ECD_04259 0.50 -0.2
4,538,767 + ECD_04259 0.64 -0.7
4,538,859 + ECD_04259 0.72 -0.4
4,538,860 - ECD_04259 0.72 -0.6
4,538,929 + ECD_04259 0.78 -1.7
4,539,046 - ECD_04259 0.87 -2.0
4,539,298 + +1.1
4,539,327 + -0.4
4,539,362 + ECD_04260 0.11 -0.2
4,539,363 - ECD_04260 0.11 -0.8
4,539,363 - ECD_04260 0.11 +0.1
4,539,363 - ECD_04260 0.11 -1.1
4,539,364 + ECD_04260 0.12 +0.1
4,539,437 + ECD_04260 0.22 -0.3
4,539,438 - ECD_04260 0.22 -1.4
4,539,438 - ECD_04260 0.22 -1.4
4,539,577 - ECD_04260 0.41 +1.6
4,539,635 - ECD_04260 0.49 -0.3
4,539,761 + ECD_04260 0.67 -0.9
4,539,762 - ECD_04260 0.67 -1.2
4,539,835 + ECD_04260 0.77 -0.4
4,539,836 - ECD_04260 0.77 -1.1
4,539,998 + +0.5
4,539,998 + +0.3
4,539,999 - -1.2
4,539,999 - -0.6
4,540,070 - -0.3
4,540,142 + +0.4
4,540,254 - ECD_04261 0.35 +0.1
4,540,254 - ECD_04261 0.35 +1.2
4,540,282 - ECD_04261 0.46 +0.2
4,540,298 + ECD_04261 0.52 +0.6
4,540,384 - ECD_04261 0.84 -0.0
4,540,458 - -0.3
4,540,458 - +0.7
4,540,648 - ECD_04262 0.19 -0.4
4,540,839 - ECD_04262 0.38 -0.8
4,540,939 - ECD_04262 0.47 +0.5
4,540,939 - ECD_04262 0.47 +0.3
4,540,979 + ECD_04262 0.51 +0.8

Or see this region's nucleotide sequence