Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04259 and ECD_04260 are separated by 79 nucleotides ECD_04260 and ECD_04261 are separated by 160 nucleotides ECD_04261 and ECD_04262 are separated by 31 nucleotides
ECD_04259: ECD_04259 - phosphopentomutase, at 4,537,978 to 4,539,201
_04259
ECD_04260: ECD_04260 - purine nucleoside phosphorylase 1; nicotinamide 1-beta-D-riboside phosphorylase, at 4,539,281 to 4,540,000
_04260
ECD_04261: ECD_04261 - hypothetical protein, at 4,540,161 to 4,540,424
_04261
ECD_04262: ECD_04262 - lipoate-protein ligase A, at 4,540,456 to 4,541,472
_04262
Position (kb)
4539
4540
4541 Strain fitness (log2 ratio)
-2
-1
0
1 at 4538.484 kb on + strand, within ECD_04259 at 4538.593 kb on + strand, within ECD_04259 at 4538.767 kb on + strand, within ECD_04259 at 4538.859 kb on + strand, within ECD_04259 at 4538.860 kb on - strand, within ECD_04259 at 4538.929 kb on + strand, within ECD_04259 at 4539.046 kb on - strand, within ECD_04259 at 4539.298 kb on + strand at 4539.327 kb on + strand at 4539.362 kb on + strand, within ECD_04260 at 4539.363 kb on - strand, within ECD_04260 at 4539.363 kb on - strand, within ECD_04260 at 4539.363 kb on - strand, within ECD_04260 at 4539.364 kb on + strand, within ECD_04260 at 4539.437 kb on + strand, within ECD_04260 at 4539.438 kb on - strand, within ECD_04260 at 4539.438 kb on - strand, within ECD_04260 at 4539.577 kb on - strand, within ECD_04260 at 4539.635 kb on - strand, within ECD_04260 at 4539.761 kb on + strand, within ECD_04260 at 4539.762 kb on - strand, within ECD_04260 at 4539.835 kb on + strand, within ECD_04260 at 4539.836 kb on - strand, within ECD_04260 at 4539.998 kb on + strand at 4539.998 kb on + strand at 4539.999 kb on - strand at 4539.999 kb on - strand at 4540.070 kb on - strand at 4540.142 kb on + strand at 4540.254 kb on - strand, within ECD_04261 at 4540.254 kb on - strand, within ECD_04261 at 4540.282 kb on - strand, within ECD_04261 at 4540.298 kb on + strand, within ECD_04261 at 4540.384 kb on - strand, within ECD_04261 at 4540.458 kb on - strand at 4540.458 kb on - strand at 4540.648 kb on - strand, within ECD_04262 at 4540.839 kb on - strand, within ECD_04262 at 4540.939 kb on - strand, within ECD_04262 at 4540.939 kb on - strand, within ECD_04262 at 4540.979 kb on + strand, within ECD_04262
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 4,538,484 + ECD_04259 0.41 -0.4 4,538,593 + ECD_04259 0.50 -0.2 4,538,767 + ECD_04259 0.64 -0.7 4,538,859 + ECD_04259 0.72 -0.4 4,538,860 - ECD_04259 0.72 -0.6 4,538,929 + ECD_04259 0.78 -1.7 4,539,046 - ECD_04259 0.87 -2.0 4,539,298 + +1.1 4,539,327 + -0.4 4,539,362 + ECD_04260 0.11 -0.2 4,539,363 - ECD_04260 0.11 -0.8 4,539,363 - ECD_04260 0.11 +0.1 4,539,363 - ECD_04260 0.11 -1.1 4,539,364 + ECD_04260 0.12 +0.1 4,539,437 + ECD_04260 0.22 -0.3 4,539,438 - ECD_04260 0.22 -1.4 4,539,438 - ECD_04260 0.22 -1.4 4,539,577 - ECD_04260 0.41 +1.6 4,539,635 - ECD_04260 0.49 -0.3 4,539,761 + ECD_04260 0.67 -0.9 4,539,762 - ECD_04260 0.67 -1.2 4,539,835 + ECD_04260 0.77 -0.4 4,539,836 - ECD_04260 0.77 -1.1 4,539,998 + +0.5 4,539,998 + +0.3 4,539,999 - -1.2 4,539,999 - -0.6 4,540,070 - -0.3 4,540,142 + +0.4 4,540,254 - ECD_04261 0.35 +0.1 4,540,254 - ECD_04261 0.35 +1.2 4,540,282 - ECD_04261 0.46 +0.2 4,540,298 + ECD_04261 0.52 +0.6 4,540,384 - ECD_04261 0.84 -0.0 4,540,458 - -0.3 4,540,458 - +0.7 4,540,648 - ECD_04262 0.19 -0.4 4,540,839 - ECD_04262 0.38 -0.8 4,540,939 - ECD_04262 0.47 +0.5 4,540,939 - ECD_04262 0.47 +0.3 4,540,979 + ECD_04262 0.51 +0.8
Or see this region's nucleotide sequence