Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04099 and ECD_04100 are separated by 32 nucleotides ECD_04100 and ECD_04101 are separated by 175 nucleotides
ECD_04099: ECD_04099 - putative sugar ABC transporter permease, at 4,365,198 to 4,366,193
_04099
ECD_04100: ECD_04100 - fructose-1,6-bisphosphatase I, at 4,366,226 to 4,367,224
_04100
ECD_04101: ECD_04101 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,367,400 to 4,368,773
_04101
Position (kb)
4366
4367
4368 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4365.253 kb on - strand at 4365.510 kb on - strand, within ECD_04099 at 4365.548 kb on + strand, within ECD_04099 at 4365.591 kb on + strand, within ECD_04099 at 4365.592 kb on - strand, within ECD_04099 at 4365.633 kb on + strand, within ECD_04099 at 4365.682 kb on + strand, within ECD_04099 at 4365.683 kb on - strand, within ECD_04099 at 4365.725 kb on + strand, within ECD_04099 at 4365.726 kb on - strand, within ECD_04099 at 4365.763 kb on + strand, within ECD_04099 at 4365.764 kb on - strand, within ECD_04099 at 4365.764 kb on - strand, within ECD_04099 at 4365.764 kb on - strand, within ECD_04099 at 4365.765 kb on + strand, within ECD_04099 at 4365.765 kb on + strand, within ECD_04099 at 4365.766 kb on - strand, within ECD_04099 at 4365.766 kb on - strand, within ECD_04099 at 4365.828 kb on - strand, within ECD_04099 at 4365.837 kb on + strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.838 kb on - strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.839 kb on + strand, within ECD_04099 at 4365.840 kb on - strand, within ECD_04099 at 4365.891 kb on - strand, within ECD_04099 at 4365.952 kb on + strand, within ECD_04099 at 4365.991 kb on + strand, within ECD_04099 at 4365.991 kb on + strand, within ECD_04099 at 4365.994 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.038 kb on + strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.039 kb on - strand, within ECD_04099 at 4366.040 kb on + strand, within ECD_04099 at 4366.117 kb on + strand at 4366.274 kb on - strand at 4366.274 kb on - strand at 4366.336 kb on + strand, within ECD_04100 at 4366.336 kb on + strand, within ECD_04100 at 4366.337 kb on - strand, within ECD_04100 at 4366.404 kb on + strand, within ECD_04100 at 4366.449 kb on + strand, within ECD_04100 at 4366.456 kb on - strand, within ECD_04100 at 4366.460 kb on - strand, within ECD_04100 at 4366.510 kb on - strand, within ECD_04100 at 4366.519 kb on + strand, within ECD_04100 at 4366.562 kb on - strand, within ECD_04100 at 4366.591 kb on + strand, within ECD_04100 at 4366.591 kb on + strand, within ECD_04100 at 4366.597 kb on - strand, within ECD_04100 at 4366.687 kb on - strand, within ECD_04100 at 4366.690 kb on + strand, within ECD_04100 at 4366.719 kb on + strand, within ECD_04100 at 4366.732 kb on + strand, within ECD_04100 at 4366.743 kb on + strand, within ECD_04100 at 4366.745 kb on + strand, within ECD_04100 at 4366.834 kb on - strand, within ECD_04100 at 4366.834 kb on - strand, within ECD_04100 at 4367.084 kb on - strand, within ECD_04100 at 4367.279 kb on + strand at 4367.279 kb on + strand at 4367.358 kb on + strand at 4367.358 kb on + strand at 4367.358 kb on + strand at 4367.358 kb on + strand at 4367.358 kb on + strand at 4367.359 kb on - strand at 4367.399 kb on + strand at 4367.399 kb on + strand at 4367.399 kb on + strand at 4367.399 kb on + strand at 4367.400 kb on - strand at 4367.412 kb on - strand at 4367.467 kb on + strand at 4367.479 kb on + strand at 4367.521 kb on + strand at 4367.521 kb on + strand at 4367.522 kb on - strand at 4367.661 kb on + strand, within ECD_04101 at 4367.661 kb on + strand, within ECD_04101 at 4367.661 kb on + strand, within ECD_04101 at 4367.662 kb on - strand, within ECD_04101 at 4367.662 kb on - strand, within ECD_04101 at 4367.663 kb on + strand, within ECD_04101 at 4367.663 kb on + strand, within ECD_04101 at 4367.663 kb on + strand, within ECD_04101 at 4367.663 kb on + strand, within ECD_04101 at 4367.663 kb on + strand, within ECD_04101 at 4367.664 kb on - strand, within ECD_04101 at 4367.664 kb on - strand, within ECD_04101 at 4367.883 kb on + strand, within ECD_04101 at 4367.884 kb on - strand, within ECD_04101 at 4368.026 kb on + strand, within ECD_04101 at 4368.027 kb on - strand, within ECD_04101 at 4368.047 kb on + strand, within ECD_04101 at 4368.050 kb on + strand, within ECD_04101
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 4,365,253 - -0.2 4,365,510 - ECD_04099 0.31 -0.5 4,365,548 + ECD_04099 0.35 -0.4 4,365,591 + ECD_04099 0.39 +0.6 4,365,592 - ECD_04099 0.40 +0.1 4,365,633 + ECD_04099 0.44 -2.2 4,365,682 + ECD_04099 0.49 -0.3 4,365,683 - ECD_04099 0.49 -0.8 4,365,725 + ECD_04099 0.53 -1.3 4,365,726 - ECD_04099 0.53 +0.4 4,365,763 + ECD_04099 0.57 +0.4 4,365,764 - ECD_04099 0.57 -0.5 4,365,764 - ECD_04099 0.57 -0.2 4,365,764 - ECD_04099 0.57 +0.7 4,365,765 + ECD_04099 0.57 +1.0 4,365,765 + ECD_04099 0.57 -1.3 4,365,766 - ECD_04099 0.57 -0.3 4,365,766 - ECD_04099 0.57 -0.7 4,365,828 - ECD_04099 0.63 -0.8 4,365,837 + ECD_04099 0.64 +0.0 4,365,838 - ECD_04099 0.64 +0.0 4,365,838 - ECD_04099 0.64 -2.7 4,365,838 - ECD_04099 0.64 +0.9 4,365,838 - ECD_04099 0.64 +0.1 4,365,839 + ECD_04099 0.64 -0.5 4,365,839 + ECD_04099 0.64 +0.2 4,365,839 + ECD_04099 0.64 -0.1 4,365,839 + ECD_04099 0.64 -1.5 4,365,839 + ECD_04099 0.64 +0.2 4,365,840 - ECD_04099 0.64 -0.5 4,365,891 - ECD_04099 0.70 +1.3 4,365,952 + ECD_04099 0.76 -0.0 4,365,991 + ECD_04099 0.80 -0.6 4,365,991 + ECD_04099 0.80 +0.3 4,365,994 + ECD_04099 0.80 -0.4 4,366,038 + ECD_04099 0.84 +0.1 4,366,038 + ECD_04099 0.84 -0.7 4,366,038 + ECD_04099 0.84 -0.2 4,366,038 + ECD_04099 0.84 -0.4 4,366,038 + ECD_04099 0.84 -0.5 4,366,038 + ECD_04099 0.84 +1.2 4,366,039 - ECD_04099 0.84 +0.4 4,366,039 - ECD_04099 0.84 +0.2 4,366,039 - ECD_04099 0.84 +0.0 4,366,039 - ECD_04099 0.84 -0.3 4,366,039 - ECD_04099 0.84 -0.6 4,366,039 - ECD_04099 0.84 -0.7 4,366,039 - ECD_04099 0.84 +0.3 4,366,039 - ECD_04099 0.84 +0.8 4,366,039 - ECD_04099 0.84 +0.1 4,366,040 + ECD_04099 0.85 +1.4 4,366,117 + +0.4 4,366,274 - -0.5 4,366,274 - -0.7 4,366,336 + ECD_04100 0.11 -2.8 4,366,336 + ECD_04100 0.11 -0.5 4,366,337 - ECD_04100 0.11 +0.2 4,366,404 + ECD_04100 0.18 -1.3 4,366,449 + ECD_04100 0.22 -1.2 4,366,456 - ECD_04100 0.23 -0.3 4,366,460 - ECD_04100 0.23 -0.3 4,366,510 - ECD_04100 0.28 -1.3 4,366,519 + ECD_04100 0.29 -0.0 4,366,562 - ECD_04100 0.34 -0.4 4,366,591 + ECD_04100 0.37 -0.4 4,366,591 + ECD_04100 0.37 -1.3 4,366,597 - ECD_04100 0.37 -0.4 4,366,687 - ECD_04100 0.46 +0.2 4,366,690 + ECD_04100 0.46 +0.0 4,366,719 + ECD_04100 0.49 -0.6 4,366,732 + ECD_04100 0.51 -1.1 4,366,743 + ECD_04100 0.52 -0.0 4,366,745 + ECD_04100 0.52 -0.6 4,366,834 - ECD_04100 0.61 +1.4 4,366,834 - ECD_04100 0.61 +1.4 4,367,084 - ECD_04100 0.86 +0.0 4,367,279 + -0.9 4,367,279 + -1.7 4,367,358 + -1.2 4,367,358 + -1.1 4,367,358 + +1.4 4,367,358 + -0.3 4,367,358 + -0.2 4,367,359 - -0.3 4,367,399 + -0.9 4,367,399 + +0.5 4,367,399 + +0.2 4,367,399 + -0.5 4,367,400 - +0.8 4,367,412 - +0.2 4,367,467 + +0.1 4,367,479 + -0.6 4,367,521 + +0.6 4,367,521 + +0.3 4,367,522 - -0.4 4,367,661 + ECD_04101 0.19 +0.8 4,367,661 + ECD_04101 0.19 +1.2 4,367,661 + ECD_04101 0.19 -0.1 4,367,662 - ECD_04101 0.19 +0.4 4,367,662 - ECD_04101 0.19 -0.8 4,367,663 + ECD_04101 0.19 -0.5 4,367,663 + ECD_04101 0.19 +0.5 4,367,663 + ECD_04101 0.19 +0.7 4,367,663 + ECD_04101 0.19 -0.2 4,367,663 + ECD_04101 0.19 -0.9 4,367,664 - ECD_04101 0.19 +0.5 4,367,664 - ECD_04101 0.19 -0.2 4,367,883 + ECD_04101 0.35 +0.2 4,367,884 - ECD_04101 0.35 +0.7 4,368,026 + ECD_04101 0.46 -0.5 4,368,027 - ECD_04101 0.46 -1.0 4,368,047 + ECD_04101 0.47 -0.2 4,368,050 + ECD_04101 0.47 -0.0
Or see this region's nucleotide sequence