Strain Fitness in Escherichia coli BL21 around ECD_04052

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04050 and ECD_04051 are separated by 17 nucleotidesECD_04051 and ECD_04052 are separated by 9 nucleotidesECD_04052 and ECD_04053 are separated by 2 nucleotides ECD_04050: ECD_04050 - DUF2491 family protein, at 4,317,822 to 4,318,481 _04050 ECD_04051: ECD_04051 - UPF0719 family inner membrane protein, at 4,318,499 to 4,318,897 _04051 ECD_04052: ECD_04052 - DUF1190 family protein, at 4,318,907 to 4,319,545 _04052 ECD_04053: ECD_04053 - ATP-Grasp family ATPase, at 4,319,548 to 4,320,711 _04053 Position (kb) 4318 4319 4320Strain fitness (log2 ratio) -3 -2 -1 0 1at 4318.035 kb on + strand, within ECD_04050at 4318.038 kb on + strand, within ECD_04050at 4318.039 kb on - strand, within ECD_04050at 4318.088 kb on + strand, within ECD_04050at 4318.089 kb on - strand, within ECD_04050at 4318.135 kb on - strand, within ECD_04050at 4318.470 kb on - strandat 4318.671 kb on - strand, within ECD_04051at 4318.786 kb on + strand, within ECD_04051at 4318.885 kb on + strandat 4318.933 kb on + strandat 4318.939 kb on + strandat 4319.083 kb on + strand, within ECD_04052at 4319.221 kb on + strand, within ECD_04052at 4319.221 kb on + strand, within ECD_04052at 4319.221 kb on + strand, within ECD_04052at 4319.245 kb on + strand, within ECD_04052at 4319.245 kb on + strand, within ECD_04052at 4319.246 kb on - strand, within ECD_04052at 4319.264 kb on + strand, within ECD_04052at 4319.355 kb on - strand, within ECD_04052at 4319.415 kb on - strand, within ECD_04052at 4319.450 kb on + strand, within ECD_04052at 4319.620 kb on - strandat 4319.620 kb on - strandat 4319.638 kb on + strandat 4319.924 kb on - strand, within ECD_04053at 4319.979 kb on + strand, within ECD_04053at 4319.980 kb on - strand, within ECD_04053at 4320.009 kb on + strand, within ECD_04053at 4320.046 kb on + strand, within ECD_04053at 4320.047 kb on - strand, within ECD_04053at 4320.102 kb on + strand, within ECD_04053at 4320.112 kb on + strand, within ECD_04053at 4320.112 kb on + strand, within ECD_04053at 4320.112 kb on + strand, within ECD_04053at 4320.113 kb on - strand, within ECD_04053at 4320.156 kb on + strand, within ECD_04053at 4320.156 kb on + strand, within ECD_04053at 4320.157 kb on - strand, within ECD_04053at 4320.214 kb on - strand, within ECD_04053at 4320.234 kb on + strand, within ECD_04053at 4320.234 kb on + strand, within ECD_04053at 4320.235 kb on - strand, within ECD_04053at 4320.235 kb on - strand, within ECD_04053at 4320.235 kb on - strand, within ECD_04053at 4320.235 kb on - strand, within ECD_04053at 4320.327 kb on + strand, within ECD_04053at 4320.327 kb on + strand, within ECD_04053at 4320.336 kb on + strand, within ECD_04053at 4320.340 kb on - strand, within ECD_04053at 4320.384 kb on + strand, within ECD_04053at 4320.385 kb on - strand, within ECD_04053at 4320.442 kb on + strand, within ECD_04053at 4320.443 kb on - strand, within ECD_04053at 4320.450 kb on + strand, within ECD_04053at 4320.504 kb on + strand, within ECD_04053at 4320.532 kb on + strand, within ECD_04053

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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4,318,035 + ECD_04050 0.32 +0.8
4,318,038 + ECD_04050 0.33 -0.2
4,318,039 - ECD_04050 0.33 +0.8
4,318,088 + ECD_04050 0.40 -0.7
4,318,089 - ECD_04050 0.40 +0.3
4,318,135 - ECD_04050 0.47 -0.2
4,318,470 - -0.1
4,318,671 - ECD_04051 0.43 +0.2
4,318,786 + ECD_04051 0.72 -0.7
4,318,885 + -0.3
4,318,933 + -0.5
4,318,939 + +0.2
4,319,083 + ECD_04052 0.28 +1.0
4,319,221 + ECD_04052 0.49 -0.6
4,319,221 + ECD_04052 0.49 -0.9
4,319,221 + ECD_04052 0.49 -0.5
4,319,245 + ECD_04052 0.53 -0.6
4,319,245 + ECD_04052 0.53 -0.3
4,319,246 - ECD_04052 0.53 -3.0
4,319,264 + ECD_04052 0.56 -0.3
4,319,355 - ECD_04052 0.70 +0.4
4,319,415 - ECD_04052 0.79 -1.4
4,319,450 + ECD_04052 0.85 +0.1
4,319,620 - +0.2
4,319,620 - +0.2
4,319,638 + +0.1
4,319,924 - ECD_04053 0.32 -0.0
4,319,979 + ECD_04053 0.37 -0.2
4,319,980 - ECD_04053 0.37 +0.5
4,320,009 + ECD_04053 0.40 -0.1
4,320,046 + ECD_04053 0.43 -0.1
4,320,047 - ECD_04053 0.43 -0.3
4,320,102 + ECD_04053 0.48 -0.1
4,320,112 + ECD_04053 0.48 +0.4
4,320,112 + ECD_04053 0.48 +0.1
4,320,112 + ECD_04053 0.48 +0.4
4,320,113 - ECD_04053 0.49 +0.5
4,320,156 + ECD_04053 0.52 +0.7
4,320,156 + ECD_04053 0.52 -0.5
4,320,157 - ECD_04053 0.52 -0.1
4,320,214 - ECD_04053 0.57 +0.8
4,320,234 + ECD_04053 0.59 -1.0
4,320,234 + ECD_04053 0.59 -1.2
4,320,235 - ECD_04053 0.59 -0.4
4,320,235 - ECD_04053 0.59 -1.5
4,320,235 - ECD_04053 0.59 -0.0
4,320,235 - ECD_04053 0.59 -0.6
4,320,327 + ECD_04053 0.67 -0.3
4,320,327 + ECD_04053 0.67 -0.1
4,320,336 + ECD_04053 0.68 +1.4
4,320,340 - ECD_04053 0.68 -0.6
4,320,384 + ECD_04053 0.72 +0.4
4,320,385 - ECD_04053 0.72 +0.6
4,320,442 + ECD_04053 0.77 -0.9
4,320,443 - ECD_04053 0.77 +0.1
4,320,450 + ECD_04053 0.77 -1.1
4,320,504 + ECD_04053 0.82 -1.7
4,320,532 + ECD_04053 0.85 -0.2

Or see this region's nucleotide sequence