Strain Fitness in Escherichia coli BL21 around ECD_03883

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03882 and ECD_03883 are separated by 11 nucleotidesECD_03883 and ECD_r00020 are separated by 616 nucleotides ECD_03882: ECD_03882 - phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase, at 4,112,667 to 4,113,956 _03882 ECD_03883: ECD_03883 - IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase, at 4,113,968 to 4,115,557 _03883 ECD_r00020: ECD_r00020 - 16S ribosomal RNA, at 4,116,174 to 4,117,715 _r00020 Position (kb) 4113 4114 4115 4116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4113.160 kb on + strand, within ECD_03882at 4113.161 kb on - strand, within ECD_03882at 4113.161 kb on - strand, within ECD_03882at 4113.206 kb on + strand, within ECD_03882at 4113.206 kb on + strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.207 kb on - strand, within ECD_03882at 4113.446 kb on + strand, within ECD_03882at 4113.446 kb on + strand, within ECD_03882at 4113.447 kb on - strand, within ECD_03882at 4113.556 kb on + strand, within ECD_03882at 4113.556 kb on + strand, within ECD_03882at 4113.557 kb on - strand, within ECD_03882at 4113.573 kb on + strand, within ECD_03882at 4113.573 kb on + strand, within ECD_03882at 4113.611 kb on + strand, within ECD_03882at 4113.612 kb on - strand, within ECD_03882at 4113.711 kb on - strand, within ECD_03882at 4113.946 kb on - strandat 4113.948 kb on + strandat 4113.948 kb on + strandat 4113.948 kb on + strandat 4113.949 kb on - strandat 4113.949 kb on - strandat 4113.958 kb on + strandat 4113.958 kb on + strandat 4113.958 kb on + strandat 4113.959 kb on - strandat 4113.959 kb on - strandat 4114.071 kb on - strandat 4114.243 kb on + strand, within ECD_03883at 4114.258 kb on - strand, within ECD_03883at 4114.472 kb on + strand, within ECD_03883at 4114.473 kb on - strand, within ECD_03883at 4114.636 kb on - strand, within ECD_03883at 4114.647 kb on + strand, within ECD_03883at 4114.771 kb on + strand, within ECD_03883at 4114.771 kb on + strand, within ECD_03883at 4114.772 kb on - strand, within ECD_03883at 4114.773 kb on + strand, within ECD_03883at 4114.773 kb on + strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.774 kb on - strand, within ECD_03883at 4114.838 kb on + strand, within ECD_03883at 4114.838 kb on + strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.839 kb on - strand, within ECD_03883at 4114.840 kb on + strand, within ECD_03883at 4114.842 kb on + strand, within ECD_03883at 4114.842 kb on + strand, within ECD_03883at 4114.842 kb on + strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883at 4114.843 kb on - strand, within ECD_03883at 4114.980 kb on + strand, within ECD_03883at 4114.981 kb on - strand, within ECD_03883at 4115.086 kb on + strand, within ECD_03883at 4115.086 kb on + strand, within ECD_03883at 4115.089 kb on + strand, within ECD_03883at 4115.134 kb on + strand, within ECD_03883at 4115.333 kb on + strand, within ECD_03883at 4115.333 kb on + strand, within ECD_03883at 4115.333 kb on + strand, within ECD_03883at 4115.333 kb on + strand, within ECD_03883at 4115.334 kb on - strand, within ECD_03883at 4115.426 kb on + strandat 4115.427 kb on - strandat 4115.560 kb on + strandat 4115.560 kb on + strandat 4115.561 kb on - strandat 4115.580 kb on - strandat 4115.580 kb on - strandat 4115.580 kb on - strandat 4115.583 kb on - strandat 4115.583 kb on - strandat 4115.583 kb on - strandat 4115.583 kb on - strandat 4115.795 kb on + strandat 4115.795 kb on + strandat 4115.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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4,113,160 + ECD_03882 0.38 +0.6
4,113,161 - ECD_03882 0.38 -0.6
4,113,161 - ECD_03882 0.38 -1.0
4,113,206 + ECD_03882 0.42 -0.1
4,113,206 + ECD_03882 0.42 -1.2
4,113,207 - ECD_03882 0.42 +0.0
4,113,207 - ECD_03882 0.42 -0.5
4,113,207 - ECD_03882 0.42 -0.3
4,113,446 + ECD_03882 0.60 -1.1
4,113,446 + ECD_03882 0.60 +1.2
4,113,447 - ECD_03882 0.60 -0.3
4,113,556 + ECD_03882 0.69 -0.1
4,113,556 + ECD_03882 0.69 +0.2
4,113,557 - ECD_03882 0.69 -0.3
4,113,573 + ECD_03882 0.70 -0.0
4,113,573 + ECD_03882 0.70 +0.7
4,113,611 + ECD_03882 0.73 +1.4
4,113,612 - ECD_03882 0.73 -0.6
4,113,711 - ECD_03882 0.81 -0.3
4,113,946 - -0.1
4,113,948 + -0.4
4,113,948 + +0.5
4,113,948 + -0.9
4,113,949 - -0.1
4,113,949 - +0.4
4,113,958 + +2.2
4,113,958 + -0.1
4,113,958 + +0.8
4,113,959 - +0.2
4,113,959 - +0.2
4,114,071 - +0.6
4,114,243 + ECD_03883 0.17 -0.5
4,114,258 - ECD_03883 0.18 +0.4
4,114,472 + ECD_03883 0.32 +2.0
4,114,473 - ECD_03883 0.32 +0.3
4,114,636 - ECD_03883 0.42 +1.2
4,114,647 + ECD_03883 0.43 -0.1
4,114,771 + ECD_03883 0.51 -1.6
4,114,771 + ECD_03883 0.51 -0.3
4,114,772 - ECD_03883 0.51 -1.2
4,114,773 + ECD_03883 0.51 -0.4
4,114,773 + ECD_03883 0.51 -0.3
4,114,774 - ECD_03883 0.51 +0.4
4,114,774 - ECD_03883 0.51 +0.1
4,114,774 - ECD_03883 0.51 -0.8
4,114,774 - ECD_03883 0.51 +0.6
4,114,838 + ECD_03883 0.55 -0.6
4,114,838 + ECD_03883 0.55 -0.3
4,114,839 - ECD_03883 0.55 -0.8
4,114,839 - ECD_03883 0.55 -1.2
4,114,839 - ECD_03883 0.55 -0.2
4,114,839 - ECD_03883 0.55 -0.9
4,114,840 + ECD_03883 0.55 -0.4
4,114,842 + ECD_03883 0.55 -0.4
4,114,842 + ECD_03883 0.55 -0.0
4,114,842 + ECD_03883 0.55 +0.3
4,114,843 - ECD_03883 0.55 -1.5
4,114,843 - ECD_03883 0.55 -0.2
4,114,843 - ECD_03883 0.55 +0.5
4,114,843 - ECD_03883 0.55 -1.9
4,114,980 + ECD_03883 0.64 -0.9
4,114,981 - ECD_03883 0.64 -4.0
4,115,086 + ECD_03883 0.70 -0.9
4,115,086 + ECD_03883 0.70 +0.4
4,115,089 + ECD_03883 0.71 +0.1
4,115,134 + ECD_03883 0.73 +1.4
4,115,333 + ECD_03883 0.86 -1.2
4,115,333 + ECD_03883 0.86 +0.2
4,115,333 + ECD_03883 0.86 -0.4
4,115,333 + ECD_03883 0.86 +0.1
4,115,334 - ECD_03883 0.86 +0.2
4,115,426 + -0.9
4,115,427 - +0.6
4,115,560 + -0.0
4,115,560 + -0.5
4,115,561 - -1.3
4,115,580 - +0.9
4,115,580 - -0.7
4,115,580 - +1.4
4,115,583 - -0.2
4,115,583 - -0.3
4,115,583 - +1.2
4,115,583 - -2.2
4,115,795 + +0.9
4,115,795 + +0.4
4,115,877 - +0.9

Or see this region's nucleotide sequence