Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03882 and ECD_03883 are separated by 11 nucleotides ECD_03883 and ECD_r00020 are separated by 616 nucleotides
ECD_03882: ECD_03882 - phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase, at 4,112,667 to 4,113,956
_03882
ECD_03883: ECD_03883 - IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase, at 4,113,968 to 4,115,557
_03883
ECD_r00020: ECD_r00020 - 16S ribosomal RNA, at 4,116,174 to 4,117,715
_r00020
Position (kb)
4113
4114
4115
4116 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4113.160 kb on + strand, within ECD_03882 at 4113.161 kb on - strand, within ECD_03882 at 4113.161 kb on - strand, within ECD_03882 at 4113.206 kb on + strand, within ECD_03882 at 4113.206 kb on + strand, within ECD_03882 at 4113.207 kb on - strand, within ECD_03882 at 4113.207 kb on - strand, within ECD_03882 at 4113.207 kb on - strand, within ECD_03882 at 4113.446 kb on + strand, within ECD_03882 at 4113.446 kb on + strand, within ECD_03882 at 4113.447 kb on - strand, within ECD_03882 at 4113.556 kb on + strand, within ECD_03882 at 4113.556 kb on + strand, within ECD_03882 at 4113.557 kb on - strand, within ECD_03882 at 4113.573 kb on + strand, within ECD_03882 at 4113.573 kb on + strand, within ECD_03882 at 4113.611 kb on + strand, within ECD_03882 at 4113.612 kb on - strand, within ECD_03882 at 4113.711 kb on - strand, within ECD_03882 at 4113.946 kb on - strand at 4113.948 kb on + strand at 4113.948 kb on + strand at 4113.948 kb on + strand at 4113.949 kb on - strand at 4113.949 kb on - strand at 4113.958 kb on + strand at 4113.958 kb on + strand at 4113.958 kb on + strand at 4113.959 kb on - strand at 4113.959 kb on - strand at 4114.071 kb on - strand at 4114.243 kb on + strand, within ECD_03883 at 4114.258 kb on - strand, within ECD_03883 at 4114.472 kb on + strand, within ECD_03883 at 4114.473 kb on - strand, within ECD_03883 at 4114.636 kb on - strand, within ECD_03883 at 4114.647 kb on + strand, within ECD_03883 at 4114.771 kb on + strand, within ECD_03883 at 4114.771 kb on + strand, within ECD_03883 at 4114.772 kb on - strand, within ECD_03883 at 4114.773 kb on + strand, within ECD_03883 at 4114.773 kb on + strand, within ECD_03883 at 4114.774 kb on - strand, within ECD_03883 at 4114.774 kb on - strand, within ECD_03883 at 4114.774 kb on - strand, within ECD_03883 at 4114.774 kb on - strand, within ECD_03883 at 4114.838 kb on + strand, within ECD_03883 at 4114.838 kb on + strand, within ECD_03883 at 4114.839 kb on - strand, within ECD_03883 at 4114.839 kb on - strand, within ECD_03883 at 4114.839 kb on - strand, within ECD_03883 at 4114.839 kb on - strand, within ECD_03883 at 4114.840 kb on + strand, within ECD_03883 at 4114.842 kb on + strand, within ECD_03883 at 4114.842 kb on + strand, within ECD_03883 at 4114.842 kb on + strand, within ECD_03883 at 4114.843 kb on - strand, within ECD_03883 at 4114.843 kb on - strand, within ECD_03883 at 4114.843 kb on - strand, within ECD_03883 at 4114.843 kb on - strand, within ECD_03883 at 4114.980 kb on + strand, within ECD_03883 at 4114.981 kb on - strand, within ECD_03883 at 4115.086 kb on + strand, within ECD_03883 at 4115.086 kb on + strand, within ECD_03883 at 4115.089 kb on + strand, within ECD_03883 at 4115.134 kb on + strand, within ECD_03883 at 4115.333 kb on + strand, within ECD_03883 at 4115.333 kb on + strand, within ECD_03883 at 4115.333 kb on + strand, within ECD_03883 at 4115.333 kb on + strand, within ECD_03883 at 4115.334 kb on - strand, within ECD_03883 at 4115.426 kb on + strand at 4115.427 kb on - strand at 4115.560 kb on + strand at 4115.560 kb on + strand at 4115.561 kb on - strand at 4115.580 kb on - strand at 4115.580 kb on - strand at 4115.580 kb on - strand at 4115.583 kb on - strand at 4115.583 kb on - strand at 4115.583 kb on - strand at 4115.583 kb on - strand at 4115.795 kb on + strand at 4115.795 kb on + strand at 4115.877 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 4,113,160 + ECD_03882 0.38 +0.6 4,113,161 - ECD_03882 0.38 -0.6 4,113,161 - ECD_03882 0.38 -1.0 4,113,206 + ECD_03882 0.42 -0.1 4,113,206 + ECD_03882 0.42 -1.2 4,113,207 - ECD_03882 0.42 +0.0 4,113,207 - ECD_03882 0.42 -0.5 4,113,207 - ECD_03882 0.42 -0.3 4,113,446 + ECD_03882 0.60 -1.1 4,113,446 + ECD_03882 0.60 +1.2 4,113,447 - ECD_03882 0.60 -0.3 4,113,556 + ECD_03882 0.69 -0.1 4,113,556 + ECD_03882 0.69 +0.2 4,113,557 - ECD_03882 0.69 -0.3 4,113,573 + ECD_03882 0.70 -0.0 4,113,573 + ECD_03882 0.70 +0.7 4,113,611 + ECD_03882 0.73 +1.4 4,113,612 - ECD_03882 0.73 -0.6 4,113,711 - ECD_03882 0.81 -0.3 4,113,946 - -0.1 4,113,948 + -0.4 4,113,948 + +0.5 4,113,948 + -0.9 4,113,949 - -0.1 4,113,949 - +0.4 4,113,958 + +2.2 4,113,958 + -0.1 4,113,958 + +0.8 4,113,959 - +0.2 4,113,959 - +0.2 4,114,071 - +0.6 4,114,243 + ECD_03883 0.17 -0.5 4,114,258 - ECD_03883 0.18 +0.4 4,114,472 + ECD_03883 0.32 +2.0 4,114,473 - ECD_03883 0.32 +0.3 4,114,636 - ECD_03883 0.42 +1.2 4,114,647 + ECD_03883 0.43 -0.1 4,114,771 + ECD_03883 0.51 -1.6 4,114,771 + ECD_03883 0.51 -0.3 4,114,772 - ECD_03883 0.51 -1.2 4,114,773 + ECD_03883 0.51 -0.4 4,114,773 + ECD_03883 0.51 -0.3 4,114,774 - ECD_03883 0.51 +0.4 4,114,774 - ECD_03883 0.51 +0.1 4,114,774 - ECD_03883 0.51 -0.8 4,114,774 - ECD_03883 0.51 +0.6 4,114,838 + ECD_03883 0.55 -0.6 4,114,838 + ECD_03883 0.55 -0.3 4,114,839 - ECD_03883 0.55 -0.8 4,114,839 - ECD_03883 0.55 -1.2 4,114,839 - ECD_03883 0.55 -0.2 4,114,839 - ECD_03883 0.55 -0.9 4,114,840 + ECD_03883 0.55 -0.4 4,114,842 + ECD_03883 0.55 -0.4 4,114,842 + ECD_03883 0.55 -0.0 4,114,842 + ECD_03883 0.55 +0.3 4,114,843 - ECD_03883 0.55 -1.5 4,114,843 - ECD_03883 0.55 -0.2 4,114,843 - ECD_03883 0.55 +0.5 4,114,843 - ECD_03883 0.55 -1.9 4,114,980 + ECD_03883 0.64 -0.9 4,114,981 - ECD_03883 0.64 -4.0 4,115,086 + ECD_03883 0.70 -0.9 4,115,086 + ECD_03883 0.70 +0.4 4,115,089 + ECD_03883 0.71 +0.1 4,115,134 + ECD_03883 0.73 +1.4 4,115,333 + ECD_03883 0.86 -1.2 4,115,333 + ECD_03883 0.86 +0.2 4,115,333 + ECD_03883 0.86 -0.4 4,115,333 + ECD_03883 0.86 +0.1 4,115,334 - ECD_03883 0.86 +0.2 4,115,426 + -0.9 4,115,427 - +0.6 4,115,560 + -0.0 4,115,560 + -0.5 4,115,561 - -1.3 4,115,580 - +0.9 4,115,580 - -0.7 4,115,580 - +1.4 4,115,583 - -0.2 4,115,583 - -0.3 4,115,583 - +1.2 4,115,583 - -2.2 4,115,795 + +0.9 4,115,795 + +0.4 4,115,877 - +0.9
Or see this region's nucleotide sequence