Strain Fitness in Escherichia coli BL21 around ECD_03739

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03738 and ECD_03739 overlap by 1 nucleotidesECD_03739 and ECD_03740 are separated by 38 nucleotides ECD_03738: ECD_03738 - proline dipeptidase, at 3,937,974 to 3,939,305 _03738 ECD_03739: ECD_03739 - UPF0029 family protein, at 3,939,305 to 3,939,919 _03739 ECD_03740: ECD_03740 - potassium transporter, at 3,939,958 to 3,941,409 _03740 Position (kb) 3939 3940Strain fitness (log2 ratio) -2 -1 0 1 2at 3938.355 kb on + strand, within ECD_03738at 3938.355 kb on + strand, within ECD_03738at 3938.356 kb on - strand, within ECD_03738at 3938.442 kb on + strand, within ECD_03738at 3938.442 kb on + strand, within ECD_03738at 3938.443 kb on - strand, within ECD_03738at 3938.443 kb on - strand, within ECD_03738at 3938.443 kb on - strand, within ECD_03738at 3938.467 kb on - strand, within ECD_03738at 3938.575 kb on - strand, within ECD_03738at 3938.608 kb on + strand, within ECD_03738at 3938.608 kb on + strand, within ECD_03738at 3938.608 kb on + strand, within ECD_03738at 3938.609 kb on - strand, within ECD_03738at 3938.609 kb on - strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.613 kb on + strand, within ECD_03738at 3938.614 kb on - strand, within ECD_03738at 3938.614 kb on - strand, within ECD_03738at 3938.614 kb on - strand, within ECD_03738at 3938.658 kb on + strand, within ECD_03738at 3938.659 kb on - strand, within ECD_03738at 3938.659 kb on - strand, within ECD_03738at 3938.724 kb on + strand, within ECD_03738at 3938.725 kb on - strand, within ECD_03738at 3938.782 kb on - strand, within ECD_03738at 3938.782 kb on - strand, within ECD_03738at 3938.849 kb on + strand, within ECD_03738at 3938.850 kb on - strand, within ECD_03738at 3938.850 kb on - strand, within ECD_03738at 3938.854 kb on - strand, within ECD_03738at 3938.854 kb on - strand, within ECD_03738at 3938.904 kb on - strand, within ECD_03738at 3938.924 kb on + strand, within ECD_03738at 3938.925 kb on - strand, within ECD_03738at 3939.026 kb on + strand, within ECD_03738at 3939.027 kb on - strand, within ECD_03738at 3939.027 kb on - strand, within ECD_03738at 3939.069 kb on + strand, within ECD_03738at 3939.076 kb on - strand, within ECD_03738at 3939.135 kb on + strand, within ECD_03738at 3939.135 kb on + strand, within ECD_03738at 3939.136 kb on - strand, within ECD_03738at 3939.136 kb on - strand, within ECD_03738at 3939.136 kb on - strand, within ECD_03738at 3939.236 kb on + strandat 3939.319 kb on - strandat 3939.373 kb on - strand, within ECD_03739at 3939.545 kb on - strand, within ECD_03739at 3939.600 kb on + strand, within ECD_03739at 3939.601 kb on - strand, within ECD_03739at 3939.609 kb on - strand, within ECD_03739at 3939.609 kb on - strand, within ECD_03739at 3939.621 kb on + strand, within ECD_03739at 3939.621 kb on + strand, within ECD_03739at 3939.621 kb on + strand, within ECD_03739at 3939.622 kb on - strand, within ECD_03739at 3939.653 kb on + strand, within ECD_03739at 3939.721 kb on + strand, within ECD_03739at 3939.722 kb on - strand, within ECD_03739at 3939.722 kb on - strand, within ECD_03739at 3939.737 kb on + strand, within ECD_03739at 3939.737 kb on + strand, within ECD_03739at 3939.917 kb on + strandat 3939.942 kb on + strandat 3939.942 kb on + strandat 3939.943 kb on - strandat 3939.943 kb on - strandat 3939.943 kb on - strandat 3940.004 kb on + strandat 3940.111 kb on - strand, within ECD_03740at 3940.172 kb on + strand, within ECD_03740at 3940.222 kb on - strand, within ECD_03740at 3940.303 kb on - strand, within ECD_03740at 3940.411 kb on - strand, within ECD_03740at 3940.522 kb on + strand, within ECD_03740at 3940.523 kb on - strand, within ECD_03740at 3940.651 kb on + strand, within ECD_03740at 3940.668 kb on + strand, within ECD_03740at 3940.677 kb on + strand, within ECD_03740at 3940.677 kb on + strand, within ECD_03740at 3940.686 kb on + strand, within ECD_03740at 3940.687 kb on - strand, within ECD_03740at 3940.710 kb on + strand, within ECD_03740at 3940.714 kb on + strand, within ECD_03740at 3940.715 kb on - strand, within ECD_03740at 3940.736 kb on + strand, within ECD_03740at 3940.746 kb on + strand, within ECD_03740at 3940.746 kb on + strand, within ECD_03740at 3940.759 kb on + strand, within ECD_03740at 3940.796 kb on + strand, within ECD_03740at 3940.797 kb on - strand, within ECD_03740at 3940.797 kb on - strand, within ECD_03740at 3940.803 kb on + strand, within ECD_03740at 3940.829 kb on + strand, within ECD_03740at 3940.849 kb on + strand, within ECD_03740at 3940.850 kb on - strand, within ECD_03740

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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3,938,355 + ECD_03738 0.29 +0.1
3,938,355 + ECD_03738 0.29 +1.8
3,938,356 - ECD_03738 0.29 +0.2
3,938,442 + ECD_03738 0.35 +0.2
3,938,442 + ECD_03738 0.35 +1.0
3,938,443 - ECD_03738 0.35 +0.0
3,938,443 - ECD_03738 0.35 +0.4
3,938,443 - ECD_03738 0.35 +0.3
3,938,467 - ECD_03738 0.37 +0.1
3,938,575 - ECD_03738 0.45 -2.3
3,938,608 + ECD_03738 0.48 -0.6
3,938,608 + ECD_03738 0.48 +0.3
3,938,608 + ECD_03738 0.48 +0.5
3,938,609 - ECD_03738 0.48 +0.8
3,938,609 - ECD_03738 0.48 -0.2
3,938,613 + ECD_03738 0.48 -0.3
3,938,613 + ECD_03738 0.48 +0.1
3,938,613 + ECD_03738 0.48 -0.1
3,938,613 + ECD_03738 0.48 +0.2
3,938,614 - ECD_03738 0.48 +0.5
3,938,614 - ECD_03738 0.48 +0.1
3,938,614 - ECD_03738 0.48 +0.3
3,938,658 + ECD_03738 0.51 -1.8
3,938,659 - ECD_03738 0.51 +0.6
3,938,659 - ECD_03738 0.51 +0.6
3,938,724 + ECD_03738 0.56 +0.1
3,938,725 - ECD_03738 0.56 -1.1
3,938,782 - ECD_03738 0.61 -0.2
3,938,782 - ECD_03738 0.61 +0.8
3,938,849 + ECD_03738 0.66 -0.5
3,938,850 - ECD_03738 0.66 -0.3
3,938,850 - ECD_03738 0.66 +0.1
3,938,854 - ECD_03738 0.66 +0.9
3,938,854 - ECD_03738 0.66 -0.7
3,938,904 - ECD_03738 0.70 +0.3
3,938,924 + ECD_03738 0.71 -0.4
3,938,925 - ECD_03738 0.71 -1.2
3,939,026 + ECD_03738 0.79 +0.0
3,939,027 - ECD_03738 0.79 -0.5
3,939,027 - ECD_03738 0.79 -1.2
3,939,069 + ECD_03738 0.82 -0.6
3,939,076 - ECD_03738 0.83 +0.4
3,939,135 + ECD_03738 0.87 -0.2
3,939,135 + ECD_03738 0.87 +0.0
3,939,136 - ECD_03738 0.87 -1.0
3,939,136 - ECD_03738 0.87 +0.4
3,939,136 - ECD_03738 0.87 -0.6
3,939,236 + +0.2
3,939,319 - -0.9
3,939,373 - ECD_03739 0.11 +0.2
3,939,545 - ECD_03739 0.39 -0.5
3,939,600 + ECD_03739 0.48 +0.8
3,939,601 - ECD_03739 0.48 -0.9
3,939,609 - ECD_03739 0.49 -0.8
3,939,609 - ECD_03739 0.49 +0.8
3,939,621 + ECD_03739 0.51 +0.6
3,939,621 + ECD_03739 0.51 -1.2
3,939,621 + ECD_03739 0.51 -1.1
3,939,622 - ECD_03739 0.52 -1.3
3,939,653 + ECD_03739 0.57 +0.0
3,939,721 + ECD_03739 0.68 +0.4
3,939,722 - ECD_03739 0.68 +1.1
3,939,722 - ECD_03739 0.68 +0.0
3,939,737 + ECD_03739 0.70 -1.4
3,939,737 + ECD_03739 0.70 -0.4
3,939,917 + -1.0
3,939,942 + -0.0
3,939,942 + +0.7
3,939,943 - -0.4
3,939,943 - +0.8
3,939,943 - +0.2
3,940,004 + -1.7
3,940,111 - ECD_03740 0.11 +0.1
3,940,172 + ECD_03740 0.15 +0.6
3,940,222 - ECD_03740 0.18 +0.0
3,940,303 - ECD_03740 0.24 -0.2
3,940,411 - ECD_03740 0.31 +0.6
3,940,522 + ECD_03740 0.39 -0.5
3,940,523 - ECD_03740 0.39 -0.5
3,940,651 + ECD_03740 0.48 +0.6
3,940,668 + ECD_03740 0.49 +0.1
3,940,677 + ECD_03740 0.50 +1.4
3,940,677 + ECD_03740 0.50 -0.2
3,940,686 + ECD_03740 0.50 -1.9
3,940,687 - ECD_03740 0.50 -0.4
3,940,710 + ECD_03740 0.52 -0.4
3,940,714 + ECD_03740 0.52 +0.0
3,940,715 - ECD_03740 0.52 -0.7
3,940,736 + ECD_03740 0.54 -1.4
3,940,746 + ECD_03740 0.54 -0.8
3,940,746 + ECD_03740 0.54 -1.0
3,940,759 + ECD_03740 0.55 +0.3
3,940,796 + ECD_03740 0.58 +0.7
3,940,797 - ECD_03740 0.58 +0.2
3,940,797 - ECD_03740 0.58 +0.3
3,940,803 + ECD_03740 0.58 +0.4
3,940,829 + ECD_03740 0.60 +2.1
3,940,849 + ECD_03740 0.61 +0.8
3,940,850 - ECD_03740 0.61 +0.8

Or see this region's nucleotide sequence