Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03738 and ECD_03739 overlap by 1 nucleotides ECD_03739 and ECD_03740 are separated by 38 nucleotides
ECD_03738: ECD_03738 - proline dipeptidase, at 3,937,974 to 3,939,305
_03738
ECD_03739: ECD_03739 - UPF0029 family protein, at 3,939,305 to 3,939,919
_03739
ECD_03740: ECD_03740 - potassium transporter, at 3,939,958 to 3,941,409
_03740
Position (kb)
3939
3940 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3938.355 kb on + strand, within ECD_03738 at 3938.355 kb on + strand, within ECD_03738 at 3938.356 kb on - strand, within ECD_03738 at 3938.442 kb on + strand, within ECD_03738 at 3938.442 kb on + strand, within ECD_03738 at 3938.443 kb on - strand, within ECD_03738 at 3938.443 kb on - strand, within ECD_03738 at 3938.443 kb on - strand, within ECD_03738 at 3938.467 kb on - strand, within ECD_03738 at 3938.575 kb on - strand, within ECD_03738 at 3938.608 kb on + strand, within ECD_03738 at 3938.608 kb on + strand, within ECD_03738 at 3938.608 kb on + strand, within ECD_03738 at 3938.609 kb on - strand, within ECD_03738 at 3938.609 kb on - strand, within ECD_03738 at 3938.613 kb on + strand, within ECD_03738 at 3938.613 kb on + strand, within ECD_03738 at 3938.613 kb on + strand, within ECD_03738 at 3938.613 kb on + strand, within ECD_03738 at 3938.614 kb on - strand, within ECD_03738 at 3938.614 kb on - strand, within ECD_03738 at 3938.614 kb on - strand, within ECD_03738 at 3938.658 kb on + strand, within ECD_03738 at 3938.659 kb on - strand, within ECD_03738 at 3938.659 kb on - strand, within ECD_03738 at 3938.724 kb on + strand, within ECD_03738 at 3938.725 kb on - strand, within ECD_03738 at 3938.782 kb on - strand, within ECD_03738 at 3938.782 kb on - strand, within ECD_03738 at 3938.849 kb on + strand, within ECD_03738 at 3938.850 kb on - strand, within ECD_03738 at 3938.850 kb on - strand, within ECD_03738 at 3938.854 kb on - strand, within ECD_03738 at 3938.854 kb on - strand, within ECD_03738 at 3938.904 kb on - strand, within ECD_03738 at 3938.924 kb on + strand, within ECD_03738 at 3938.925 kb on - strand, within ECD_03738 at 3939.026 kb on + strand, within ECD_03738 at 3939.027 kb on - strand, within ECD_03738 at 3939.027 kb on - strand, within ECD_03738 at 3939.069 kb on + strand, within ECD_03738 at 3939.076 kb on - strand, within ECD_03738 at 3939.135 kb on + strand, within ECD_03738 at 3939.135 kb on + strand, within ECD_03738 at 3939.136 kb on - strand, within ECD_03738 at 3939.136 kb on - strand, within ECD_03738 at 3939.136 kb on - strand, within ECD_03738 at 3939.236 kb on + strand at 3939.319 kb on - strand at 3939.373 kb on - strand, within ECD_03739 at 3939.545 kb on - strand, within ECD_03739 at 3939.600 kb on + strand, within ECD_03739 at 3939.601 kb on - strand, within ECD_03739 at 3939.609 kb on - strand, within ECD_03739 at 3939.609 kb on - strand, within ECD_03739 at 3939.621 kb on + strand, within ECD_03739 at 3939.621 kb on + strand, within ECD_03739 at 3939.621 kb on + strand, within ECD_03739 at 3939.622 kb on - strand, within ECD_03739 at 3939.653 kb on + strand, within ECD_03739 at 3939.721 kb on + strand, within ECD_03739 at 3939.722 kb on - strand, within ECD_03739 at 3939.722 kb on - strand, within ECD_03739 at 3939.737 kb on + strand, within ECD_03739 at 3939.737 kb on + strand, within ECD_03739 at 3939.917 kb on + strand at 3939.942 kb on + strand at 3939.942 kb on + strand at 3939.943 kb on - strand at 3939.943 kb on - strand at 3939.943 kb on - strand at 3940.004 kb on + strand at 3940.111 kb on - strand, within ECD_03740 at 3940.172 kb on + strand, within ECD_03740 at 3940.222 kb on - strand, within ECD_03740 at 3940.303 kb on - strand, within ECD_03740 at 3940.411 kb on - strand, within ECD_03740 at 3940.522 kb on + strand, within ECD_03740 at 3940.523 kb on - strand, within ECD_03740 at 3940.651 kb on + strand, within ECD_03740 at 3940.668 kb on + strand, within ECD_03740 at 3940.677 kb on + strand, within ECD_03740 at 3940.677 kb on + strand, within ECD_03740 at 3940.686 kb on + strand, within ECD_03740 at 3940.687 kb on - strand, within ECD_03740 at 3940.710 kb on + strand, within ECD_03740 at 3940.714 kb on + strand, within ECD_03740 at 3940.715 kb on - strand, within ECD_03740 at 3940.736 kb on + strand, within ECD_03740 at 3940.746 kb on + strand, within ECD_03740 at 3940.746 kb on + strand, within ECD_03740 at 3940.759 kb on + strand, within ECD_03740 at 3940.796 kb on + strand, within ECD_03740 at 3940.797 kb on - strand, within ECD_03740 at 3940.797 kb on - strand, within ECD_03740 at 3940.803 kb on + strand, within ECD_03740 at 3940.829 kb on + strand, within ECD_03740 at 3940.849 kb on + strand, within ECD_03740 at 3940.850 kb on - strand, within ECD_03740
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 3,938,355 + ECD_03738 0.29 +0.1 3,938,355 + ECD_03738 0.29 +1.8 3,938,356 - ECD_03738 0.29 +0.2 3,938,442 + ECD_03738 0.35 +0.2 3,938,442 + ECD_03738 0.35 +1.0 3,938,443 - ECD_03738 0.35 +0.0 3,938,443 - ECD_03738 0.35 +0.4 3,938,443 - ECD_03738 0.35 +0.3 3,938,467 - ECD_03738 0.37 +0.1 3,938,575 - ECD_03738 0.45 -2.3 3,938,608 + ECD_03738 0.48 -0.6 3,938,608 + ECD_03738 0.48 +0.3 3,938,608 + ECD_03738 0.48 +0.5 3,938,609 - ECD_03738 0.48 +0.8 3,938,609 - ECD_03738 0.48 -0.2 3,938,613 + ECD_03738 0.48 -0.3 3,938,613 + ECD_03738 0.48 +0.1 3,938,613 + ECD_03738 0.48 -0.1 3,938,613 + ECD_03738 0.48 +0.2 3,938,614 - ECD_03738 0.48 +0.5 3,938,614 - ECD_03738 0.48 +0.1 3,938,614 - ECD_03738 0.48 +0.3 3,938,658 + ECD_03738 0.51 -1.8 3,938,659 - ECD_03738 0.51 +0.6 3,938,659 - ECD_03738 0.51 +0.6 3,938,724 + ECD_03738 0.56 +0.1 3,938,725 - ECD_03738 0.56 -1.1 3,938,782 - ECD_03738 0.61 -0.2 3,938,782 - ECD_03738 0.61 +0.8 3,938,849 + ECD_03738 0.66 -0.5 3,938,850 - ECD_03738 0.66 -0.3 3,938,850 - ECD_03738 0.66 +0.1 3,938,854 - ECD_03738 0.66 +0.9 3,938,854 - ECD_03738 0.66 -0.7 3,938,904 - ECD_03738 0.70 +0.3 3,938,924 + ECD_03738 0.71 -0.4 3,938,925 - ECD_03738 0.71 -1.2 3,939,026 + ECD_03738 0.79 +0.0 3,939,027 - ECD_03738 0.79 -0.5 3,939,027 - ECD_03738 0.79 -1.2 3,939,069 + ECD_03738 0.82 -0.6 3,939,076 - ECD_03738 0.83 +0.4 3,939,135 + ECD_03738 0.87 -0.2 3,939,135 + ECD_03738 0.87 +0.0 3,939,136 - ECD_03738 0.87 -1.0 3,939,136 - ECD_03738 0.87 +0.4 3,939,136 - ECD_03738 0.87 -0.6 3,939,236 + +0.2 3,939,319 - -0.9 3,939,373 - ECD_03739 0.11 +0.2 3,939,545 - ECD_03739 0.39 -0.5 3,939,600 + ECD_03739 0.48 +0.8 3,939,601 - ECD_03739 0.48 -0.9 3,939,609 - ECD_03739 0.49 -0.8 3,939,609 - ECD_03739 0.49 +0.8 3,939,621 + ECD_03739 0.51 +0.6 3,939,621 + ECD_03739 0.51 -1.2 3,939,621 + ECD_03739 0.51 -1.1 3,939,622 - ECD_03739 0.52 -1.3 3,939,653 + ECD_03739 0.57 +0.0 3,939,721 + ECD_03739 0.68 +0.4 3,939,722 - ECD_03739 0.68 +1.1 3,939,722 - ECD_03739 0.68 +0.0 3,939,737 + ECD_03739 0.70 -1.4 3,939,737 + ECD_03739 0.70 -0.4 3,939,917 + -1.0 3,939,942 + -0.0 3,939,942 + +0.7 3,939,943 - -0.4 3,939,943 - +0.8 3,939,943 - +0.2 3,940,004 + -1.7 3,940,111 - ECD_03740 0.11 +0.1 3,940,172 + ECD_03740 0.15 +0.6 3,940,222 - ECD_03740 0.18 +0.0 3,940,303 - ECD_03740 0.24 -0.2 3,940,411 - ECD_03740 0.31 +0.6 3,940,522 + ECD_03740 0.39 -0.5 3,940,523 - ECD_03740 0.39 -0.5 3,940,651 + ECD_03740 0.48 +0.6 3,940,668 + ECD_03740 0.49 +0.1 3,940,677 + ECD_03740 0.50 +1.4 3,940,677 + ECD_03740 0.50 -0.2 3,940,686 + ECD_03740 0.50 -1.9 3,940,687 - ECD_03740 0.50 -0.4 3,940,710 + ECD_03740 0.52 -0.4 3,940,714 + ECD_03740 0.52 +0.0 3,940,715 - ECD_03740 0.52 -0.7 3,940,736 + ECD_03740 0.54 -1.4 3,940,746 + ECD_03740 0.54 -0.8 3,940,746 + ECD_03740 0.54 -1.0 3,940,759 + ECD_03740 0.55 +0.3 3,940,796 + ECD_03740 0.58 +0.7 3,940,797 - ECD_03740 0.58 +0.2 3,940,797 - ECD_03740 0.58 +0.3 3,940,803 + ECD_03740 0.58 +0.4 3,940,829 + ECD_03740 0.60 +2.1 3,940,849 + ECD_03740 0.61 +0.8 3,940,850 - ECD_03740 0.61 +0.8
Or see this region's nucleotide sequence