Strain Fitness in Escherichia coli BL21 around ECD_03671

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03670 and ECD_03671 overlap by 4 nucleotidesECD_03671 and ECD_03672 overlap by 4 nucleotides ECD_03670: ECD_03670 - O-antigen translocase, at 3,866,518 to 3,867,768 _03670 ECD_03671: ECD_03671 - TDP-Fuc4NAc:lipidIIFuc4NAc transferase, at 3,867,765 to 3,868,844 _03671 ECD_03672: ECD_03672 - putative ECA polysaccharide chain elongation protein, at 3,868,841 to 3,870,193 _03672 Position (kb) 3867 3868 3869Strain fitness (log2 ratio) -2 -1 0 1at 3868.130 kb on + strand, within ECD_03671at 3868.358 kb on + strand, within ECD_03671at 3868.446 kb on + strand, within ECD_03671at 3868.543 kb on + strand, within ECD_03671at 3868.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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3,868,130 + ECD_03671 0.34 -1.0
3,868,358 + ECD_03671 0.55 -0.6
3,868,446 + ECD_03671 0.63 +0.2
3,868,543 + ECD_03671 0.72 -2.0
3,868,791 + +0.4

Or see this region's nucleotide sequence