Strain Fitness in Escherichia coli BL21 around ECD_03206

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03204 and ECD_03205 overlap by 7 nucleotidesECD_03205 and ECD_03206 are separated by 53 nucleotidesECD_03206 and ECD_03207 are separated by 54 nucleotidesECD_03207 and ECD_03208 are separated by 301 nucleotides ECD_03204: ECD_03204 - UPF0017 family putative hydrolase, at 3,342,803 to 3,343,825 _03204 ECD_03205: ECD_03205 - UPF0270 family protein, at 3,343,819 to 3,344,037 _03205 ECD_03206: ECD_03206 - putative phosphoribulokinase, at 3,344,091 to 3,344,960 _03206 ECD_03207: ECD_03207 - OsmC family protein, at 3,345,015 to 3,345,419 _03207 ECD_03208: ECD_03208 - cAMP-activated global transcription factor, mediator of catabolite repression, at 3,345,721 to 3,346,353 _03208 Position (kb) 3344 3345Strain fitness (log2 ratio) -2 -1 0 1at 3343.156 kb on + strand, within ECD_03204at 3343.169 kb on + strand, within ECD_03204at 3343.206 kb on + strand, within ECD_03204at 3343.273 kb on + strand, within ECD_03204at 3343.273 kb on + strand, within ECD_03204at 3343.274 kb on - strand, within ECD_03204at 3343.274 kb on - strand, within ECD_03204at 3343.348 kb on + strand, within ECD_03204at 3343.363 kb on + strand, within ECD_03204at 3343.363 kb on + strand, within ECD_03204at 3343.363 kb on + strand, within ECD_03204at 3343.363 kb on + strand, within ECD_03204at 3343.364 kb on - strand, within ECD_03204at 3343.367 kb on + strand, within ECD_03204at 3343.367 kb on + strand, within ECD_03204at 3343.367 kb on + strand, within ECD_03204at 3343.368 kb on - strand, within ECD_03204at 3343.368 kb on - strand, within ECD_03204at 3343.368 kb on - strand, within ECD_03204at 3343.368 kb on - strand, within ECD_03204at 3343.397 kb on + strand, within ECD_03204at 3343.406 kb on + strand, within ECD_03204at 3343.407 kb on - strand, within ECD_03204at 3343.422 kb on + strand, within ECD_03204at 3343.558 kb on + strand, within ECD_03204at 3343.565 kb on + strand, within ECD_03204at 3343.568 kb on + strand, within ECD_03204at 3343.569 kb on - strand, within ECD_03204at 3343.569 kb on - strand, within ECD_03204at 3343.579 kb on + strand, within ECD_03204at 3343.579 kb on + strand, within ECD_03204at 3343.579 kb on + strand, within ECD_03204at 3343.749 kb on + strandat 3343.749 kb on + strandat 3343.749 kb on + strandat 3343.749 kb on + strandat 3343.750 kb on - strandat 3343.750 kb on - strandat 3343.750 kb on - strandat 3343.750 kb on - strandat 3343.750 kb on - strandat 3343.794 kb on + strandat 3343.794 kb on + strandat 3343.803 kb on - strandat 3343.803 kb on - strandat 3343.900 kb on + strand, within ECD_03205at 3343.917 kb on + strand, within ECD_03205at 3343.917 kb on + strand, within ECD_03205at 3343.917 kb on + strand, within ECD_03205at 3343.918 kb on - strand, within ECD_03205at 3343.955 kb on + strand, within ECD_03205at 3343.955 kb on + strand, within ECD_03205at 3343.955 kb on + strand, within ECD_03205at 3343.955 kb on + strand, within ECD_03205at 3343.956 kb on - strand, within ECD_03205at 3344.011 kb on - strand, within ECD_03205at 3344.061 kb on + strandat 3344.062 kb on - strandat 3344.070 kb on + strandat 3344.074 kb on + strandat 3344.074 kb on + strandat 3344.074 kb on + strandat 3344.088 kb on - strandat 3344.090 kb on + strandat 3344.091 kb on - strandat 3344.091 kb on - strandat 3344.174 kb on - strandat 3344.229 kb on + strand, within ECD_03206at 3344.285 kb on + strand, within ECD_03206at 3344.286 kb on - strand, within ECD_03206at 3344.379 kb on + strand, within ECD_03206at 3344.387 kb on + strand, within ECD_03206at 3344.387 kb on + strand, within ECD_03206at 3344.388 kb on - strand, within ECD_03206at 3344.388 kb on - strand, within ECD_03206at 3344.391 kb on + strand, within ECD_03206at 3344.467 kb on + strand, within ECD_03206at 3344.467 kb on + strand, within ECD_03206at 3344.476 kb on - strand, within ECD_03206at 3344.485 kb on + strand, within ECD_03206at 3344.513 kb on + strand, within ECD_03206at 3344.513 kb on + strand, within ECD_03206at 3344.513 kb on + strand, within ECD_03206at 3344.536 kb on + strand, within ECD_03206at 3344.537 kb on - strand, within ECD_03206at 3344.639 kb on - strand, within ECD_03206at 3344.658 kb on + strand, within ECD_03206at 3344.659 kb on - strand, within ECD_03206at 3344.659 kb on - strand, within ECD_03206at 3344.659 kb on - strand, within ECD_03206at 3344.659 kb on - strand, within ECD_03206at 3344.659 kb on - strand, within ECD_03206at 3344.659 kb on - strand, within ECD_03206at 3344.660 kb on + strand, within ECD_03206at 3344.660 kb on + strand, within ECD_03206at 3344.660 kb on + strand, within ECD_03206at 3344.661 kb on - strand, within ECD_03206at 3344.667 kb on + strand, within ECD_03206at 3344.667 kb on + strand, within ECD_03206at 3344.668 kb on - strand, within ECD_03206at 3344.753 kb on + strand, within ECD_03206at 3344.864 kb on + strand, within ECD_03206at 3344.864 kb on + strand, within ECD_03206at 3344.864 kb on + strand, within ECD_03206at 3344.864 kb on + strand, within ECD_03206at 3344.865 kb on - strand, within ECD_03206at 3344.865 kb on - strand, within ECD_03206at 3344.865 kb on - strand, within ECD_03206at 3344.865 kb on - strand, within ECD_03206at 3344.869 kb on + strand, within ECD_03206at 3344.869 kb on + strand, within ECD_03206at 3344.875 kb on + strandat 3344.908 kb on + strandat 3344.909 kb on - strandat 3344.909 kb on - strandat 3344.913 kb on - strandat 3344.958 kb on + strandat 3344.959 kb on - strandat 3345.011 kb on + strandat 3345.011 kb on + strandat 3345.011 kb on + strandat 3345.012 kb on - strandat 3345.012 kb on - strandat 3345.085 kb on + strand, within ECD_03207at 3345.164 kb on + strand, within ECD_03207at 3345.456 kb on + strandat 3345.462 kb on + strandat 3345.462 kb on + strandat 3345.463 kb on - strandat 3345.463 kb on - strandat 3345.542 kb on + strandat 3345.542 kb on + strandat 3345.559 kb on + strandat 3345.559 kb on + strandat 3345.564 kb on + strandat 3345.567 kb on + strandat 3345.567 kb on + strandat 3345.567 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.577 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.586 kb on + strandat 3345.615 kb on + strandat 3345.702 kb on + strandat 3345.702 kb on + strandat 3345.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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3,343,156 + ECD_03204 0.35 +0.1
3,343,169 + ECD_03204 0.36 +0.3
3,343,206 + ECD_03204 0.39 -0.3
3,343,273 + ECD_03204 0.46 -0.6
3,343,273 + ECD_03204 0.46 +0.4
3,343,274 - ECD_03204 0.46 -0.2
3,343,274 - ECD_03204 0.46 +1.1
3,343,348 + ECD_03204 0.53 +0.3
3,343,363 + ECD_03204 0.55 -0.5
3,343,363 + ECD_03204 0.55 -0.1
3,343,363 + ECD_03204 0.55 +0.3
3,343,363 + ECD_03204 0.55 +0.0
3,343,364 - ECD_03204 0.55 +0.5
3,343,367 + ECD_03204 0.55 -0.0
3,343,367 + ECD_03204 0.55 +0.2
3,343,367 + ECD_03204 0.55 +0.0
3,343,368 - ECD_03204 0.55 -0.3
3,343,368 - ECD_03204 0.55 -1.1
3,343,368 - ECD_03204 0.55 +0.1
3,343,368 - ECD_03204 0.55 +0.3
3,343,397 + ECD_03204 0.58 -2.1
3,343,406 + ECD_03204 0.59 -0.6
3,343,407 - ECD_03204 0.59 -0.3
3,343,422 + ECD_03204 0.61 -0.1
3,343,558 + ECD_03204 0.74 +0.7
3,343,565 + ECD_03204 0.74 +0.3
3,343,568 + ECD_03204 0.75 -0.4
3,343,569 - ECD_03204 0.75 -0.4
3,343,569 - ECD_03204 0.75 -0.1
3,343,579 + ECD_03204 0.76 -0.7
3,343,579 + ECD_03204 0.76 -0.5
3,343,579 + ECD_03204 0.76 +1.3
3,343,749 + +0.0
3,343,749 + +0.3
3,343,749 + -0.3
3,343,749 + +1.7
3,343,750 - +0.1
3,343,750 - +0.0
3,343,750 - +0.0
3,343,750 - -0.1
3,343,750 - +0.4
3,343,794 + +0.1
3,343,794 + -1.1
3,343,803 - -0.1
3,343,803 - -0.3
3,343,900 + ECD_03205 0.37 +1.4
3,343,917 + ECD_03205 0.45 -0.4
3,343,917 + ECD_03205 0.45 +0.2
3,343,917 + ECD_03205 0.45 +0.4
3,343,918 - ECD_03205 0.45 +1.1
3,343,955 + ECD_03205 0.62 -0.6
3,343,955 + ECD_03205 0.62 +1.1
3,343,955 + ECD_03205 0.62 -0.6
3,343,955 + ECD_03205 0.62 -0.4
3,343,956 - ECD_03205 0.63 -1.3
3,344,011 - ECD_03205 0.88 +1.1
3,344,061 + +0.7
3,344,062 - -0.4
3,344,070 + +0.3
3,344,074 + -0.2
3,344,074 + -0.9
3,344,074 + -0.6
3,344,088 - -0.9
3,344,090 + +0.2
3,344,091 - +1.2
3,344,091 - +0.2
3,344,174 - +0.1
3,344,229 + ECD_03206 0.16 +0.6
3,344,285 + ECD_03206 0.22 +1.1
3,344,286 - ECD_03206 0.22 +0.6
3,344,379 + ECD_03206 0.33 +0.0
3,344,387 + ECD_03206 0.34 +0.7
3,344,387 + ECD_03206 0.34 +1.1
3,344,388 - ECD_03206 0.34 +0.6
3,344,388 - ECD_03206 0.34 +0.3
3,344,391 + ECD_03206 0.34 +0.9
3,344,467 + ECD_03206 0.43 -0.4
3,344,467 + ECD_03206 0.43 -0.7
3,344,476 - ECD_03206 0.44 -0.1
3,344,485 + ECD_03206 0.45 +1.3
3,344,513 + ECD_03206 0.49 +0.5
3,344,513 + ECD_03206 0.49 +0.2
3,344,513 + ECD_03206 0.49 +0.1
3,344,536 + ECD_03206 0.51 -1.8
3,344,537 - ECD_03206 0.51 +0.3
3,344,639 - ECD_03206 0.63 +0.2
3,344,658 + ECD_03206 0.65 +0.3
3,344,659 - ECD_03206 0.65 -0.2
3,344,659 - ECD_03206 0.65 +0.5
3,344,659 - ECD_03206 0.65 +0.9
3,344,659 - ECD_03206 0.65 +1.0
3,344,659 - ECD_03206 0.65 -0.7
3,344,659 - ECD_03206 0.65 -0.3
3,344,660 + ECD_03206 0.65 -0.6
3,344,660 + ECD_03206 0.65 +0.9
3,344,660 + ECD_03206 0.65 -0.6
3,344,661 - ECD_03206 0.66 +0.4
3,344,667 + ECD_03206 0.66 +0.4
3,344,667 + ECD_03206 0.66 -0.2
3,344,668 - ECD_03206 0.66 +0.5
3,344,753 + ECD_03206 0.76 +0.2
3,344,864 + ECD_03206 0.89 +0.6
3,344,864 + ECD_03206 0.89 +0.1
3,344,864 + ECD_03206 0.89 -0.6
3,344,864 + ECD_03206 0.89 -0.5
3,344,865 - ECD_03206 0.89 +0.3
3,344,865 - ECD_03206 0.89 +0.6
3,344,865 - ECD_03206 0.89 +0.1
3,344,865 - ECD_03206 0.89 +0.7
3,344,869 + ECD_03206 0.89 +1.4
3,344,869 + ECD_03206 0.89 -0.4
3,344,875 + -0.1
3,344,908 + +0.7
3,344,909 - +0.1
3,344,909 - +0.4
3,344,913 - -0.7
3,344,958 + -1.0
3,344,959 - -0.6
3,345,011 + -0.6
3,345,011 + -2.1
3,345,011 + -0.3
3,345,012 - +0.5
3,345,012 - -1.0
3,345,085 + ECD_03207 0.17 +0.3
3,345,164 + ECD_03207 0.37 +0.4
3,345,456 + +1.1
3,345,462 + -1.2
3,345,462 + -0.7
3,345,463 - -0.4
3,345,463 - +0.2
3,345,542 + +0.8
3,345,542 + +0.3
3,345,559 + +0.3
3,345,559 + +0.3
3,345,564 + -0.0
3,345,567 + +0.4
3,345,567 + -1.1
3,345,567 + -0.2
3,345,577 + -0.6
3,345,577 + -0.4
3,345,577 + -1.1
3,345,577 + -1.0
3,345,577 + -1.1
3,345,577 + -0.6
3,345,586 + -0.9
3,345,586 + -0.9
3,345,586 + -0.3
3,345,586 + +0.1
3,345,586 + +0.8
3,345,586 + +1.0
3,345,586 + +0.2
3,345,586 + -1.1
3,345,615 + +1.1
3,345,702 + +0.6
3,345,702 + -0.4
3,345,702 + -0.2

Or see this region's nucleotide sequence