Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03204 and ECD_03205 overlap by 7 nucleotides ECD_03205 and ECD_03206 are separated by 53 nucleotides ECD_03206 and ECD_03207 are separated by 54 nucleotides ECD_03207 and ECD_03208 are separated by 301 nucleotides
ECD_03204: ECD_03204 - UPF0017 family putative hydrolase, at 3,342,803 to 3,343,825
_03204
ECD_03205: ECD_03205 - UPF0270 family protein, at 3,343,819 to 3,344,037
_03205
ECD_03206: ECD_03206 - putative phosphoribulokinase, at 3,344,091 to 3,344,960
_03206
ECD_03207: ECD_03207 - OsmC family protein, at 3,345,015 to 3,345,419
_03207
ECD_03208: ECD_03208 - cAMP-activated global transcription factor, mediator of catabolite repression, at 3,345,721 to 3,346,353
_03208
Position (kb)
3344
3345 Strain fitness (log2 ratio)
-2
-1
0
1 at 3343.156 kb on + strand, within ECD_03204 at 3343.169 kb on + strand, within ECD_03204 at 3343.206 kb on + strand, within ECD_03204 at 3343.273 kb on + strand, within ECD_03204 at 3343.273 kb on + strand, within ECD_03204 at 3343.274 kb on - strand, within ECD_03204 at 3343.274 kb on - strand, within ECD_03204 at 3343.348 kb on + strand, within ECD_03204 at 3343.363 kb on + strand, within ECD_03204 at 3343.363 kb on + strand, within ECD_03204 at 3343.363 kb on + strand, within ECD_03204 at 3343.363 kb on + strand, within ECD_03204 at 3343.364 kb on - strand, within ECD_03204 at 3343.367 kb on + strand, within ECD_03204 at 3343.367 kb on + strand, within ECD_03204 at 3343.367 kb on + strand, within ECD_03204 at 3343.368 kb on - strand, within ECD_03204 at 3343.368 kb on - strand, within ECD_03204 at 3343.368 kb on - strand, within ECD_03204 at 3343.368 kb on - strand, within ECD_03204 at 3343.397 kb on + strand, within ECD_03204 at 3343.406 kb on + strand, within ECD_03204 at 3343.407 kb on - strand, within ECD_03204 at 3343.422 kb on + strand, within ECD_03204 at 3343.558 kb on + strand, within ECD_03204 at 3343.565 kb on + strand, within ECD_03204 at 3343.568 kb on + strand, within ECD_03204 at 3343.569 kb on - strand, within ECD_03204 at 3343.569 kb on - strand, within ECD_03204 at 3343.579 kb on + strand, within ECD_03204 at 3343.579 kb on + strand, within ECD_03204 at 3343.579 kb on + strand, within ECD_03204 at 3343.749 kb on + strand at 3343.749 kb on + strand at 3343.749 kb on + strand at 3343.749 kb on + strand at 3343.750 kb on - strand at 3343.750 kb on - strand at 3343.750 kb on - strand at 3343.750 kb on - strand at 3343.750 kb on - strand at 3343.794 kb on + strand at 3343.794 kb on + strand at 3343.803 kb on - strand at 3343.803 kb on - strand at 3343.900 kb on + strand, within ECD_03205 at 3343.917 kb on + strand, within ECD_03205 at 3343.917 kb on + strand, within ECD_03205 at 3343.917 kb on + strand, within ECD_03205 at 3343.918 kb on - strand, within ECD_03205 at 3343.955 kb on + strand, within ECD_03205 at 3343.955 kb on + strand, within ECD_03205 at 3343.955 kb on + strand, within ECD_03205 at 3343.955 kb on + strand, within ECD_03205 at 3343.956 kb on - strand, within ECD_03205 at 3344.011 kb on - strand, within ECD_03205 at 3344.061 kb on + strand at 3344.062 kb on - strand at 3344.070 kb on + strand at 3344.074 kb on + strand at 3344.074 kb on + strand at 3344.074 kb on + strand at 3344.088 kb on - strand at 3344.090 kb on + strand at 3344.091 kb on - strand at 3344.091 kb on - strand at 3344.174 kb on - strand at 3344.229 kb on + strand, within ECD_03206 at 3344.285 kb on + strand, within ECD_03206 at 3344.286 kb on - strand, within ECD_03206 at 3344.379 kb on + strand, within ECD_03206 at 3344.387 kb on + strand, within ECD_03206 at 3344.387 kb on + strand, within ECD_03206 at 3344.388 kb on - strand, within ECD_03206 at 3344.388 kb on - strand, within ECD_03206 at 3344.391 kb on + strand, within ECD_03206 at 3344.467 kb on + strand, within ECD_03206 at 3344.467 kb on + strand, within ECD_03206 at 3344.476 kb on - strand, within ECD_03206 at 3344.485 kb on + strand, within ECD_03206 at 3344.513 kb on + strand, within ECD_03206 at 3344.513 kb on + strand, within ECD_03206 at 3344.513 kb on + strand, within ECD_03206 at 3344.536 kb on + strand, within ECD_03206 at 3344.537 kb on - strand, within ECD_03206 at 3344.639 kb on - strand, within ECD_03206 at 3344.658 kb on + strand, within ECD_03206 at 3344.659 kb on - strand, within ECD_03206 at 3344.659 kb on - strand, within ECD_03206 at 3344.659 kb on - strand, within ECD_03206 at 3344.659 kb on - strand, within ECD_03206 at 3344.659 kb on - strand, within ECD_03206 at 3344.659 kb on - strand, within ECD_03206 at 3344.660 kb on + strand, within ECD_03206 at 3344.660 kb on + strand, within ECD_03206 at 3344.660 kb on + strand, within ECD_03206 at 3344.661 kb on - strand, within ECD_03206 at 3344.667 kb on + strand, within ECD_03206 at 3344.667 kb on + strand, within ECD_03206 at 3344.668 kb on - strand, within ECD_03206 at 3344.753 kb on + strand, within ECD_03206 at 3344.864 kb on + strand, within ECD_03206 at 3344.864 kb on + strand, within ECD_03206 at 3344.864 kb on + strand, within ECD_03206 at 3344.864 kb on + strand, within ECD_03206 at 3344.865 kb on - strand, within ECD_03206 at 3344.865 kb on - strand, within ECD_03206 at 3344.865 kb on - strand, within ECD_03206 at 3344.865 kb on - strand, within ECD_03206 at 3344.869 kb on + strand, within ECD_03206 at 3344.869 kb on + strand, within ECD_03206 at 3344.875 kb on + strand at 3344.908 kb on + strand at 3344.909 kb on - strand at 3344.909 kb on - strand at 3344.913 kb on - strand at 3344.958 kb on + strand at 3344.959 kb on - strand at 3345.011 kb on + strand at 3345.011 kb on + strand at 3345.011 kb on + strand at 3345.012 kb on - strand at 3345.012 kb on - strand at 3345.085 kb on + strand, within ECD_03207 at 3345.164 kb on + strand, within ECD_03207 at 3345.456 kb on + strand at 3345.462 kb on + strand at 3345.462 kb on + strand at 3345.463 kb on - strand at 3345.463 kb on - strand at 3345.542 kb on + strand at 3345.542 kb on + strand at 3345.559 kb on + strand at 3345.559 kb on + strand at 3345.564 kb on + strand at 3345.567 kb on + strand at 3345.567 kb on + strand at 3345.567 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.577 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.586 kb on + strand at 3345.615 kb on + strand at 3345.702 kb on + strand at 3345.702 kb on + strand at 3345.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 3,343,156 + ECD_03204 0.35 +0.1 3,343,169 + ECD_03204 0.36 +0.3 3,343,206 + ECD_03204 0.39 -0.3 3,343,273 + ECD_03204 0.46 -0.6 3,343,273 + ECD_03204 0.46 +0.4 3,343,274 - ECD_03204 0.46 -0.2 3,343,274 - ECD_03204 0.46 +1.1 3,343,348 + ECD_03204 0.53 +0.3 3,343,363 + ECD_03204 0.55 -0.5 3,343,363 + ECD_03204 0.55 -0.1 3,343,363 + ECD_03204 0.55 +0.3 3,343,363 + ECD_03204 0.55 +0.0 3,343,364 - ECD_03204 0.55 +0.5 3,343,367 + ECD_03204 0.55 -0.0 3,343,367 + ECD_03204 0.55 +0.2 3,343,367 + ECD_03204 0.55 +0.0 3,343,368 - ECD_03204 0.55 -0.3 3,343,368 - ECD_03204 0.55 -1.1 3,343,368 - ECD_03204 0.55 +0.1 3,343,368 - ECD_03204 0.55 +0.3 3,343,397 + ECD_03204 0.58 -2.1 3,343,406 + ECD_03204 0.59 -0.6 3,343,407 - ECD_03204 0.59 -0.3 3,343,422 + ECD_03204 0.61 -0.1 3,343,558 + ECD_03204 0.74 +0.7 3,343,565 + ECD_03204 0.74 +0.3 3,343,568 + ECD_03204 0.75 -0.4 3,343,569 - ECD_03204 0.75 -0.4 3,343,569 - ECD_03204 0.75 -0.1 3,343,579 + ECD_03204 0.76 -0.7 3,343,579 + ECD_03204 0.76 -0.5 3,343,579 + ECD_03204 0.76 +1.3 3,343,749 + +0.0 3,343,749 + +0.3 3,343,749 + -0.3 3,343,749 + +1.7 3,343,750 - +0.1 3,343,750 - +0.0 3,343,750 - +0.0 3,343,750 - -0.1 3,343,750 - +0.4 3,343,794 + +0.1 3,343,794 + -1.1 3,343,803 - -0.1 3,343,803 - -0.3 3,343,900 + ECD_03205 0.37 +1.4 3,343,917 + ECD_03205 0.45 -0.4 3,343,917 + ECD_03205 0.45 +0.2 3,343,917 + ECD_03205 0.45 +0.4 3,343,918 - ECD_03205 0.45 +1.1 3,343,955 + ECD_03205 0.62 -0.6 3,343,955 + ECD_03205 0.62 +1.1 3,343,955 + ECD_03205 0.62 -0.6 3,343,955 + ECD_03205 0.62 -0.4 3,343,956 - ECD_03205 0.63 -1.3 3,344,011 - ECD_03205 0.88 +1.1 3,344,061 + +0.7 3,344,062 - -0.4 3,344,070 + +0.3 3,344,074 + -0.2 3,344,074 + -0.9 3,344,074 + -0.6 3,344,088 - -0.9 3,344,090 + +0.2 3,344,091 - +1.2 3,344,091 - +0.2 3,344,174 - +0.1 3,344,229 + ECD_03206 0.16 +0.6 3,344,285 + ECD_03206 0.22 +1.1 3,344,286 - ECD_03206 0.22 +0.6 3,344,379 + ECD_03206 0.33 +0.0 3,344,387 + ECD_03206 0.34 +0.7 3,344,387 + ECD_03206 0.34 +1.1 3,344,388 - ECD_03206 0.34 +0.6 3,344,388 - ECD_03206 0.34 +0.3 3,344,391 + ECD_03206 0.34 +0.9 3,344,467 + ECD_03206 0.43 -0.4 3,344,467 + ECD_03206 0.43 -0.7 3,344,476 - ECD_03206 0.44 -0.1 3,344,485 + ECD_03206 0.45 +1.3 3,344,513 + ECD_03206 0.49 +0.5 3,344,513 + ECD_03206 0.49 +0.2 3,344,513 + ECD_03206 0.49 +0.1 3,344,536 + ECD_03206 0.51 -1.8 3,344,537 - ECD_03206 0.51 +0.3 3,344,639 - ECD_03206 0.63 +0.2 3,344,658 + ECD_03206 0.65 +0.3 3,344,659 - ECD_03206 0.65 -0.2 3,344,659 - ECD_03206 0.65 +0.5 3,344,659 - ECD_03206 0.65 +0.9 3,344,659 - ECD_03206 0.65 +1.0 3,344,659 - ECD_03206 0.65 -0.7 3,344,659 - ECD_03206 0.65 -0.3 3,344,660 + ECD_03206 0.65 -0.6 3,344,660 + ECD_03206 0.65 +0.9 3,344,660 + ECD_03206 0.65 -0.6 3,344,661 - ECD_03206 0.66 +0.4 3,344,667 + ECD_03206 0.66 +0.4 3,344,667 + ECD_03206 0.66 -0.2 3,344,668 - ECD_03206 0.66 +0.5 3,344,753 + ECD_03206 0.76 +0.2 3,344,864 + ECD_03206 0.89 +0.6 3,344,864 + ECD_03206 0.89 +0.1 3,344,864 + ECD_03206 0.89 -0.6 3,344,864 + ECD_03206 0.89 -0.5 3,344,865 - ECD_03206 0.89 +0.3 3,344,865 - ECD_03206 0.89 +0.6 3,344,865 - ECD_03206 0.89 +0.1 3,344,865 - ECD_03206 0.89 +0.7 3,344,869 + ECD_03206 0.89 +1.4 3,344,869 + ECD_03206 0.89 -0.4 3,344,875 + -0.1 3,344,908 + +0.7 3,344,909 - +0.1 3,344,909 - +0.4 3,344,913 - -0.7 3,344,958 + -1.0 3,344,959 - -0.6 3,345,011 + -0.6 3,345,011 + -2.1 3,345,011 + -0.3 3,345,012 - +0.5 3,345,012 - -1.0 3,345,085 + ECD_03207 0.17 +0.3 3,345,164 + ECD_03207 0.37 +0.4 3,345,456 + +1.1 3,345,462 + -1.2 3,345,462 + -0.7 3,345,463 - -0.4 3,345,463 - +0.2 3,345,542 + +0.8 3,345,542 + +0.3 3,345,559 + +0.3 3,345,559 + +0.3 3,345,564 + -0.0 3,345,567 + +0.4 3,345,567 + -1.1 3,345,567 + -0.2 3,345,577 + -0.6 3,345,577 + -0.4 3,345,577 + -1.1 3,345,577 + -1.0 3,345,577 + -1.1 3,345,577 + -0.6 3,345,586 + -0.9 3,345,586 + -0.9 3,345,586 + -0.3 3,345,586 + +0.1 3,345,586 + +0.8 3,345,586 + +1.0 3,345,586 + +0.2 3,345,586 + -1.1 3,345,615 + +1.1 3,345,702 + +0.6 3,345,702 + -0.4 3,345,702 + -0.2
Or see this region's nucleotide sequence