Strain Fitness in Escherichia coli BL21 around ECD_02820

Experiment: Bas29

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02819 and ECD_02820 are separated by 253 nucleotidesECD_02820 and ECD_02821 are separated by 61 nucleotides ECD_02819: ECD_02819 - KpsS protein, at 2,952,412 to 2,953,644 _02819 ECD_02820: ECD_02820 - hypothetical protein, at 2,953,898 to 2,954,830 _02820 ECD_02821: ECD_02821 - hypothetical protein, at 2,954,892 to 2,956,031 _02821 Position (kb) 2953 2954 2955Strain fitness (log2 ratio) -1 0 1at 2952.899 kb on + strand, within ECD_02819at 2952.899 kb on + strand, within ECD_02819at 2952.899 kb on + strand, within ECD_02819at 2952.917 kb on - strand, within ECD_02819at 2952.919 kb on + strand, within ECD_02819at 2953.093 kb on + strand, within ECD_02819at 2953.094 kb on - strand, within ECD_02819at 2953.094 kb on - strand, within ECD_02819at 2953.149 kb on + strand, within ECD_02819at 2953.167 kb on + strand, within ECD_02819at 2953.167 kb on + strand, within ECD_02819at 2953.468 kb on - strand, within ECD_02819at 2954.663 kb on + strand, within ECD_02820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
remove
2,952,899 + ECD_02819 0.39 -1.0
2,952,899 + ECD_02819 0.39 +0.9
2,952,899 + ECD_02819 0.39 +0.4
2,952,917 - ECD_02819 0.41 +0.4
2,952,919 + ECD_02819 0.41 -0.4
2,953,093 + ECD_02819 0.55 +0.2
2,953,094 - ECD_02819 0.55 -0.1
2,953,094 - ECD_02819 0.55 +0.6
2,953,149 + ECD_02819 0.60 -0.1
2,953,167 + ECD_02819 0.61 +0.2
2,953,167 + ECD_02819 0.61 +0.3
2,953,468 - ECD_02819 0.86 -0.2
2,954,663 + ECD_02820 0.82 -1.7

Or see this region's nucleotide sequence