Strain Fitness in Escherichia coli BL21 around ECD_02410

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02409 and ECD_02410 are separated by 149 nucleotidesECD_02410 and ECD_02411 are separated by 148 nucleotides ECD_02409: ECD_02409 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent, at 2,507,609 to 2,508,763 _02409 ECD_02410: ECD_02410 - multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase, at 2,508,913 to 2,509,344 _02410 ECD_02411: ECD_02411 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein, at 2,509,493 to 2,511,805 _02411 Position (kb) 2508 2509 2510Strain fitness (log2 ratio) -1 0 1at 2507.929 kb on - strand, within ECD_02409at 2507.929 kb on - strand, within ECD_02409at 2507.929 kb on - strand, within ECD_02409at 2508.010 kb on - strand, within ECD_02409at 2508.010 kb on - strand, within ECD_02409at 2508.092 kb on - strand, within ECD_02409at 2508.120 kb on - strand, within ECD_02409at 2508.152 kb on - strand, within ECD_02409at 2508.246 kb on - strand, within ECD_02409at 2508.377 kb on - strand, within ECD_02409at 2508.441 kb on + strand, within ECD_02409at 2508.442 kb on - strand, within ECD_02409at 2508.442 kb on - strand, within ECD_02409at 2508.442 kb on - strand, within ECD_02409at 2508.442 kb on - strand, within ECD_02409at 2508.442 kb on - strand, within ECD_02409at 2508.442 kb on - strand, within ECD_02409at 2508.442 kb on - strand, within ECD_02409at 2508.485 kb on - strand, within ECD_02409at 2508.610 kb on - strand, within ECD_02409at 2508.615 kb on + strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.616 kb on - strand, within ECD_02409at 2508.749 kb on + strandat 2508.750 kb on - strandat 2508.763 kb on + strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.764 kb on - strandat 2508.768 kb on + strandat 2508.768 kb on + strandat 2508.769 kb on - strandat 2508.769 kb on - strandat 2508.786 kb on - strandat 2508.862 kb on - strandat 2509.281 kb on + strand, within ECD_02410at 2509.357 kb on - strandat 2509.357 kb on - strandat 2509.403 kb on + strandat 2509.554 kb on + strandat 2509.847 kb on + strand, within ECD_02411at 2509.848 kb on - strand, within ECD_02411at 2509.953 kb on - strand, within ECD_02411at 2509.955 kb on + strand, within ECD_02411at 2510.119 kb on + strand, within ECD_02411at 2510.119 kb on + strand, within ECD_02411at 2510.122 kb on + strand, within ECD_02411at 2510.122 kb on + strand, within ECD_02411at 2510.217 kb on + strand, within ECD_02411

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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2,507,929 - ECD_02409 0.28 -0.9
2,507,929 - ECD_02409 0.28 -0.3
2,507,929 - ECD_02409 0.28 +0.6
2,508,010 - ECD_02409 0.35 +0.1
2,508,010 - ECD_02409 0.35 -0.3
2,508,092 - ECD_02409 0.42 +1.2
2,508,120 - ECD_02409 0.44 -0.4
2,508,152 - ECD_02409 0.47 -0.8
2,508,246 - ECD_02409 0.55 -0.4
2,508,377 - ECD_02409 0.66 -1.1
2,508,441 + ECD_02409 0.72 -0.1
2,508,442 - ECD_02409 0.72 -0.5
2,508,442 - ECD_02409 0.72 +0.7
2,508,442 - ECD_02409 0.72 -0.2
2,508,442 - ECD_02409 0.72 -0.0
2,508,442 - ECD_02409 0.72 -0.5
2,508,442 - ECD_02409 0.72 +0.3
2,508,442 - ECD_02409 0.72 -0.7
2,508,485 - ECD_02409 0.76 -0.4
2,508,610 - ECD_02409 0.87 -0.9
2,508,615 + ECD_02409 0.87 +0.1
2,508,616 - ECD_02409 0.87 -0.7
2,508,616 - ECD_02409 0.87 +0.3
2,508,616 - ECD_02409 0.87 -1.3
2,508,616 - ECD_02409 0.87 -0.2
2,508,616 - ECD_02409 0.87 -0.5
2,508,616 - ECD_02409 0.87 +0.2
2,508,749 + -0.8
2,508,750 - -0.6
2,508,763 + -0.2
2,508,764 - +0.1
2,508,764 - -0.7
2,508,764 - -1.4
2,508,764 - +0.1
2,508,764 - +0.0
2,508,768 + -1.6
2,508,768 + -1.2
2,508,769 - +0.5
2,508,769 - +0.5
2,508,786 - -0.4
2,508,862 - -0.1
2,509,281 + ECD_02410 0.85 -1.1
2,509,357 - -0.4
2,509,357 - +0.1
2,509,403 + -0.6
2,509,554 + -0.4
2,509,847 + ECD_02411 0.15 -0.1
2,509,848 - ECD_02411 0.15 +0.3
2,509,953 - ECD_02411 0.20 +0.5
2,509,955 + ECD_02411 0.20 +1.5
2,510,119 + ECD_02411 0.27 -0.0
2,510,119 + ECD_02411 0.27 -0.6
2,510,122 + ECD_02411 0.27 -0.7
2,510,122 + ECD_02411 0.27 -0.6
2,510,217 + ECD_02411 0.31 +1.1

Or see this region's nucleotide sequence