Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02409 and ECD_02410 are separated by 149 nucleotides ECD_02410 and ECD_02411 are separated by 148 nucleotides
ECD_02409: ECD_02409 - dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent, at 2,507,609 to 2,508,763
_02409
ECD_02410: ECD_02410 - multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase, at 2,508,913 to 2,509,344
_02410
ECD_02411: ECD_02411 - penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein, at 2,509,493 to 2,511,805
_02411
Position (kb)
2508
2509
2510 Strain fitness (log2 ratio)
-1
0
1 at 2507.929 kb on - strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2507.929 kb on - strand, within ECD_02409 at 2508.010 kb on - strand, within ECD_02409 at 2508.010 kb on - strand, within ECD_02409 at 2508.092 kb on - strand, within ECD_02409 at 2508.120 kb on - strand, within ECD_02409 at 2508.152 kb on - strand, within ECD_02409 at 2508.246 kb on - strand, within ECD_02409 at 2508.377 kb on - strand, within ECD_02409 at 2508.441 kb on + strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.442 kb on - strand, within ECD_02409 at 2508.485 kb on - strand, within ECD_02409 at 2508.610 kb on - strand, within ECD_02409 at 2508.615 kb on + strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.616 kb on - strand, within ECD_02409 at 2508.749 kb on + strand at 2508.750 kb on - strand at 2508.763 kb on + strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.764 kb on - strand at 2508.768 kb on + strand at 2508.768 kb on + strand at 2508.769 kb on - strand at 2508.769 kb on - strand at 2508.786 kb on - strand at 2508.862 kb on - strand at 2509.281 kb on + strand, within ECD_02410 at 2509.357 kb on - strand at 2509.357 kb on - strand at 2509.403 kb on + strand at 2509.554 kb on + strand at 2509.847 kb on + strand, within ECD_02411 at 2509.848 kb on - strand, within ECD_02411 at 2509.953 kb on - strand, within ECD_02411 at 2509.955 kb on + strand, within ECD_02411 at 2510.119 kb on + strand, within ECD_02411 at 2510.119 kb on + strand, within ECD_02411 at 2510.122 kb on + strand, within ECD_02411 at 2510.122 kb on + strand, within ECD_02411 at 2510.217 kb on + strand, within ECD_02411
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 2,507,929 - ECD_02409 0.28 -0.9 2,507,929 - ECD_02409 0.28 -0.3 2,507,929 - ECD_02409 0.28 +0.6 2,508,010 - ECD_02409 0.35 +0.1 2,508,010 - ECD_02409 0.35 -0.3 2,508,092 - ECD_02409 0.42 +1.2 2,508,120 - ECD_02409 0.44 -0.4 2,508,152 - ECD_02409 0.47 -0.8 2,508,246 - ECD_02409 0.55 -0.4 2,508,377 - ECD_02409 0.66 -1.1 2,508,441 + ECD_02409 0.72 -0.1 2,508,442 - ECD_02409 0.72 -0.5 2,508,442 - ECD_02409 0.72 +0.7 2,508,442 - ECD_02409 0.72 -0.2 2,508,442 - ECD_02409 0.72 -0.0 2,508,442 - ECD_02409 0.72 -0.5 2,508,442 - ECD_02409 0.72 +0.3 2,508,442 - ECD_02409 0.72 -0.7 2,508,485 - ECD_02409 0.76 -0.4 2,508,610 - ECD_02409 0.87 -0.9 2,508,615 + ECD_02409 0.87 +0.1 2,508,616 - ECD_02409 0.87 -0.7 2,508,616 - ECD_02409 0.87 +0.3 2,508,616 - ECD_02409 0.87 -1.3 2,508,616 - ECD_02409 0.87 -0.2 2,508,616 - ECD_02409 0.87 -0.5 2,508,616 - ECD_02409 0.87 +0.2 2,508,749 + -0.8 2,508,750 - -0.6 2,508,763 + -0.2 2,508,764 - +0.1 2,508,764 - -0.7 2,508,764 - -1.4 2,508,764 - +0.1 2,508,764 - +0.0 2,508,768 + -1.6 2,508,768 + -1.2 2,508,769 - +0.5 2,508,769 - +0.5 2,508,786 - -0.4 2,508,862 - -0.1 2,509,281 + ECD_02410 0.85 -1.1 2,509,357 - -0.4 2,509,357 - +0.1 2,509,403 + -0.6 2,509,554 + -0.4 2,509,847 + ECD_02411 0.15 -0.1 2,509,848 - ECD_02411 0.15 +0.3 2,509,953 - ECD_02411 0.20 +0.5 2,509,955 + ECD_02411 0.20 +1.5 2,510,119 + ECD_02411 0.27 -0.0 2,510,119 + ECD_02411 0.27 -0.6 2,510,122 + ECD_02411 0.27 -0.7 2,510,122 + ECD_02411 0.27 -0.6 2,510,217 + ECD_02411 0.31 +1.1
Or see this region's nucleotide sequence