Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02303 and ECD_t00039 are separated by 208 nucleotides ECD_t00039 and ECD_t00040 are separated by 39 nucleotides ECD_t00040 and ECD_02304 are separated by 235 nucleotides ECD_02304 and ECD_02305 are separated by 1 nucleotides ECD_02305 and ECD_02306 are separated by 51 nucleotides
ECD_02303: ECD_02303 - putative diguanylate cyclase, at 2,392,180 to 2,394,369
_02303
ECD_t00039: ECD_t00039 - tRNA-Ala, at 2,394,578 to 2,394,653
_t00039
ECD_t00040: ECD_t00040 - tRNA-Ala, at 2,394,693 to 2,394,768
_t00040
ECD_02304: ECD_02304 - DUF1323 family putative DNA-binding protein, at 2,395,004 to 2,395,348
_02304
ECD_02305: ECD_02305 - DUF1323 family putative DNA-binding protein, at 2,395,350 to 2,395,742
_02305
ECD_02306: ECD_02306 - glutamyl-tRNA synthetase, at 2,395,794 to 2,397,209
_02306
Position (kb)
2395
2396 Strain fitness (log2 ratio)
-2
-1
0
1 at 2394.379 kb on - strand at 2394.508 kb on + strand at 2394.509 kb on - strand at 2394.588 kb on - strand, within ECD_t00039 at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.646 kb on - strand at 2394.776 kb on - strand at 2394.806 kb on - strand at 2394.911 kb on + strand at 2394.912 kb on - strand at 2394.945 kb on + strand at 2394.955 kb on + strand at 2394.972 kb on - strand at 2394.972 kb on - strand at 2395.057 kb on + strand, within ECD_02304 at 2395.057 kb on + strand, within ECD_02304 at 2395.057 kb on + strand, within ECD_02304 at 2395.228 kb on - strand, within ECD_02304 at 2395.279 kb on + strand, within ECD_02304 at 2395.280 kb on - strand, within ECD_02304 at 2395.346 kb on + strand at 2395.346 kb on + strand at 2395.346 kb on + strand at 2395.349 kb on + strand at 2395.409 kb on + strand, within ECD_02305 at 2395.524 kb on - strand, within ECD_02305 at 2395.647 kb on - strand, within ECD_02305 at 2395.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 2,394,379 - -0.1 2,394,508 + -2.2 2,394,509 - -0.9 2,394,588 - ECD_t00039 0.13 +0.2 2,394,646 - +0.2 2,394,646 - -0.7 2,394,646 - -1.1 2,394,646 - -0.1 2,394,646 - -0.9 2,394,646 - -0.2 2,394,646 - -0.9 2,394,646 - -1.1 2,394,776 - +0.1 2,394,806 - -1.4 2,394,911 + -0.2 2,394,912 - -0.6 2,394,945 + +0.4 2,394,955 + +0.3 2,394,972 - +0.3 2,394,972 - +1.2 2,395,057 + ECD_02304 0.15 -0.9 2,395,057 + ECD_02304 0.15 -0.7 2,395,057 + ECD_02304 0.15 +1.1 2,395,228 - ECD_02304 0.65 -0.1 2,395,279 + ECD_02304 0.80 -1.1 2,395,280 - ECD_02304 0.80 +0.3 2,395,346 + +0.6 2,395,346 + +1.0 2,395,346 + -1.2 2,395,349 + -0.4 2,395,409 + ECD_02305 0.15 -0.1 2,395,524 - ECD_02305 0.44 -2.0 2,395,647 - ECD_02305 0.76 -1.0 2,395,792 - -0.4
Or see this region's nucleotide sequence