Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02146 and ECD_02147 overlap by 4 nucleotides ECD_02147 and ECD_02148 are separated by 195 nucleotides ECD_02148 and ECD_02149 overlap by 1 nucleotides
ECD_02146: ECD_02146 - sensory histidine kinase in two-component regulatory system with AtoC, at 2,210,404 to 2,212,230
_02146
ECD_02147: ECD_02147 - fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein, at 2,212,227 to 2,213,612
_02147
ECD_02148: ECD_02148 - acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit, at 2,213,808 to 2,214,470
_02148
ECD_02149: ECD_02149 - acetyl-CoA:acetoacetyl-CoA transferase, beta subunit, at 2,214,470 to 2,215,120
_02149
Position (kb)
2212
2213
2214 Strain fitness (log2 ratio)
-1
0
1
2 at 2211.255 kb on - strand, within ECD_02146 at 2211.255 kb on - strand, within ECD_02146 at 2211.255 kb on - strand, within ECD_02146 at 2211.342 kb on + strand, within ECD_02146 at 2211.602 kb on + strand, within ECD_02146 at 2211.607 kb on - strand, within ECD_02146 at 2211.669 kb on - strand, within ECD_02146 at 2211.669 kb on - strand, within ECD_02146 at 2211.852 kb on - strand, within ECD_02146 at 2211.914 kb on + strand, within ECD_02146 at 2211.985 kb on + strand, within ECD_02146 at 2212.227 kb on - strand at 2212.236 kb on - strand at 2212.348 kb on + strand at 2212.479 kb on + strand, within ECD_02147 at 2212.480 kb on - strand, within ECD_02147 at 2212.531 kb on - strand, within ECD_02147 at 2212.536 kb on - strand, within ECD_02147 at 2212.996 kb on + strand, within ECD_02147 at 2213.104 kb on + strand, within ECD_02147 at 2213.158 kb on + strand, within ECD_02147 at 2213.193 kb on - strand, within ECD_02147 at 2213.572 kb on - strand at 2213.608 kb on + strand at 2213.609 kb on - strand at 2213.763 kb on - strand at 2213.830 kb on + strand at 2213.830 kb on + strand at 2213.886 kb on - strand, within ECD_02148 at 2214.074 kb on - strand, within ECD_02148 at 2214.111 kb on - strand, within ECD_02148 at 2214.307 kb on - strand, within ECD_02148 at 2214.356 kb on + strand, within ECD_02148 at 2214.589 kb on + strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149 at 2214.590 kb on - strand, within ECD_02149
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 2,211,255 - ECD_02146 0.47 +0.8 2,211,255 - ECD_02146 0.47 +0.2 2,211,255 - ECD_02146 0.47 -0.2 2,211,342 + ECD_02146 0.51 +2.0 2,211,602 + ECD_02146 0.66 -0.0 2,211,607 - ECD_02146 0.66 -0.2 2,211,669 - ECD_02146 0.69 -0.5 2,211,669 - ECD_02146 0.69 +0.2 2,211,852 - ECD_02146 0.79 +0.3 2,211,914 + ECD_02146 0.83 -0.9 2,211,985 + ECD_02146 0.87 +0.5 2,212,227 - -0.4 2,212,236 - +0.4 2,212,348 + -0.2 2,212,479 + ECD_02147 0.18 -0.2 2,212,480 - ECD_02147 0.18 -0.1 2,212,531 - ECD_02147 0.22 +0.7 2,212,536 - ECD_02147 0.22 +0.9 2,212,996 + ECD_02147 0.55 +0.9 2,213,104 + ECD_02147 0.63 +0.7 2,213,158 + ECD_02147 0.67 +0.4 2,213,193 - ECD_02147 0.70 +0.3 2,213,572 - +0.4 2,213,608 + -0.0 2,213,609 - +0.7 2,213,763 - +0.5 2,213,830 + -0.5 2,213,830 + +0.9 2,213,886 - ECD_02148 0.12 -0.4 2,214,074 - ECD_02148 0.40 -1.2 2,214,111 - ECD_02148 0.46 -0.5 2,214,307 - ECD_02148 0.75 -0.9 2,214,356 + ECD_02148 0.83 +0.8 2,214,589 + ECD_02149 0.18 -0.6 2,214,590 - ECD_02149 0.18 +0.2 2,214,590 - ECD_02149 0.18 -0.3
Or see this region's nucleotide sequence