Strain Fitness in Escherichia coli BL21 around ECD_02144

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02142 and ECD_02143 are separated by 69 nucleotidesECD_02143 and ECD_02144 overlap by 82 nucleotidesECD_02144 and ECD_02145 are separated by 274 nucleotides ECD_02142: ECD_02142 - outer membrane porin protein C, at 2,205,411 to 2,206,346 _02142 ECD_02143: ECD_02143 - IS1 protein InsB, at 2,206,416 to 2,206,919 _02143 ECD_02144: ECD_02144 - IS1 protein InsA, at 2,206,838 to 2,207,113 _02144 ECD_02145: ECD_02145 - hybrid sensory kinase in two-component regulatory system with RcsB and YojN, at 2,207,388 to 2,210,237 _02145 Position (kb) 2206 2207 2208Strain fitness (log2 ratio) -2 -1 0 1at 2205.846 kb on - strand, within ECD_02142at 2205.895 kb on + strand, within ECD_02142at 2205.903 kb on - strand, within ECD_02142at 2205.954 kb on - strand, within ECD_02142at 2205.965 kb on + strand, within ECD_02142at 2205.969 kb on - strand, within ECD_02142at 2206.061 kb on - strand, within ECD_02142at 2206.108 kb on + strand, within ECD_02142at 2206.109 kb on - strand, within ECD_02142at 2206.153 kb on - strand, within ECD_02142at 2206.171 kb on + strand, within ECD_02142at 2206.349 kb on - strandat 2207.180 kb on - strandat 2207.187 kb on - strandat 2207.224 kb on - strandat 2207.319 kb on + strandat 2207.423 kb on - strandat 2207.425 kb on - strandat 2207.425 kb on - strandat 2207.597 kb on + strandat 2207.598 kb on - strandat 2207.598 kb on - strandat 2207.598 kb on - strandat 2207.598 kb on - strandat 2207.598 kb on - strandat 2207.645 kb on + strandat 2207.646 kb on - strandat 2207.650 kb on - strandat 2207.774 kb on + strand, within ECD_02145at 2207.893 kb on - strand, within ECD_02145at 2207.983 kb on - strand, within ECD_02145at 2207.994 kb on - strand, within ECD_02145at 2208.031 kb on + strand, within ECD_02145at 2208.031 kb on + strand, within ECD_02145at 2208.032 kb on - strand, within ECD_02145

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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2,205,846 - ECD_02142 0.46 -0.4
2,205,895 + ECD_02142 0.52 +0.2
2,205,903 - ECD_02142 0.53 -2.0
2,205,954 - ECD_02142 0.58 +0.6
2,205,965 + ECD_02142 0.59 -0.1
2,205,969 - ECD_02142 0.60 +1.0
2,206,061 - ECD_02142 0.69 -2.2
2,206,108 + ECD_02142 0.74 +0.5
2,206,109 - ECD_02142 0.75 +1.0
2,206,153 - ECD_02142 0.79 -0.2
2,206,171 + ECD_02142 0.81 -0.3
2,206,349 - +0.9
2,207,180 - -0.4
2,207,187 - +0.2
2,207,224 - -0.1
2,207,319 + -0.6
2,207,423 - -1.2
2,207,425 - -1.5
2,207,425 - -0.3
2,207,597 + +0.0
2,207,598 - +0.1
2,207,598 - +0.4
2,207,598 - -0.5
2,207,598 - +0.7
2,207,598 - -0.4
2,207,645 + -0.1
2,207,646 - -0.1
2,207,650 - +0.2
2,207,774 + ECD_02145 0.14 +0.0
2,207,893 - ECD_02145 0.18 -0.7
2,207,983 - ECD_02145 0.21 -0.6
2,207,994 - ECD_02145 0.21 +0.5
2,208,031 + ECD_02145 0.23 +1.5
2,208,031 + ECD_02145 0.23 +0.1
2,208,032 - ECD_02145 0.23 +0.4

Or see this region's nucleotide sequence