Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02131 and ECD_02132 overlap by 14 nucleotides ECD_02132 and ECD_02133 are separated by 6 nucleotides ECD_02133 and ECD_02134 overlap by 4 nucleotides ECD_02134 and ECD_02135 overlap by 11 nucleotides ECD_02135 and ECD_04337 are separated by 108 nucleotides
ECD_02131: ECD_02131 - ferredoxin-type protein, at 2,192,365 to 2,193,228
_02131
ECD_02132: ECD_02132 - ferredoxin-type protein, at 2,193,215 to 2,193,910
_02132
ECD_02133: ECD_02133 - nitrate reductase, periplasmic, large subunit, at 2,193,917 to 2,196,403
_02133
ECD_02134: ECD_02134 - assembly protein for periplasmic nitrate reductase, at 2,196,400 to 2,196,663
_02134
ECD_02135: ECD_02135 - ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase NapA, at 2,196,653 to 2,197,147
_02135
ECD_04337: ECD_04337 - hypothetical protein, at 2,197,256 to 2,197,420
_04337
Position (kb)
2193
2194
2195
2196
2197 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2193.069 kb on - strand, within ECD_02131 at 2193.266 kb on + strand at 2193.266 kb on + strand at 2193.267 kb on - strand at 2193.340 kb on + strand, within ECD_02132 at 2193.693 kb on + strand, within ECD_02132 at 2194.033 kb on - strand at 2194.033 kb on - strand at 2194.033 kb on - strand at 2194.270 kb on - strand, within ECD_02133 at 2194.345 kb on - strand, within ECD_02133 at 2194.456 kb on - strand, within ECD_02133 at 2194.456 kb on - strand, within ECD_02133 at 2194.507 kb on - strand, within ECD_02133 at 2194.534 kb on - strand, within ECD_02133 at 2194.617 kb on + strand, within ECD_02133 at 2194.618 kb on - strand, within ECD_02133 at 2194.682 kb on + strand, within ECD_02133 at 2194.683 kb on - strand, within ECD_02133 at 2194.922 kb on - strand, within ECD_02133 at 2194.963 kb on + strand, within ECD_02133 at 2194.964 kb on - strand, within ECD_02133 at 2194.977 kb on + strand, within ECD_02133 at 2195.242 kb on - strand, within ECD_02133 at 2195.328 kb on + strand, within ECD_02133 at 2195.328 kb on + strand, within ECD_02133 at 2195.349 kb on - strand, within ECD_02133 at 2195.396 kb on - strand, within ECD_02133 at 2195.396 kb on - strand, within ECD_02133 at 2195.396 kb on - strand, within ECD_02133 at 2195.396 kb on - strand, within ECD_02133 at 2195.583 kb on + strand, within ECD_02133 at 2195.584 kb on - strand, within ECD_02133 at 2195.659 kb on + strand, within ECD_02133 at 2195.675 kb on - strand, within ECD_02133 at 2195.828 kb on - strand, within ECD_02133 at 2195.836 kb on + strand, within ECD_02133 at 2196.082 kb on + strand, within ECD_02133 at 2196.129 kb on + strand, within ECD_02133 at 2196.370 kb on + strand at 2196.654 kb on + strand at 2196.669 kb on + strand at 2196.670 kb on - strand at 2196.681 kb on - strand at 2196.739 kb on + strand, within ECD_02135 at 2196.740 kb on - strand, within ECD_02135 at 2196.781 kb on + strand, within ECD_02135 at 2196.803 kb on - strand, within ECD_02135
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 2,193,069 - ECD_02131 0.81 -0.1 2,193,266 + -0.4 2,193,266 + +0.0 2,193,267 - -0.4 2,193,340 + ECD_02132 0.18 -1.5 2,193,693 + ECD_02132 0.69 -0.4 2,194,033 - +0.1 2,194,033 - +0.4 2,194,033 - +2.0 2,194,270 - ECD_02133 0.14 -0.5 2,194,345 - ECD_02133 0.17 +0.3 2,194,456 - ECD_02133 0.22 +0.2 2,194,456 - ECD_02133 0.22 -0.1 2,194,507 - ECD_02133 0.24 +0.7 2,194,534 - ECD_02133 0.25 -1.9 2,194,617 + ECD_02133 0.28 -0.5 2,194,618 - ECD_02133 0.28 +0.6 2,194,682 + ECD_02133 0.31 +0.6 2,194,683 - ECD_02133 0.31 +0.4 2,194,922 - ECD_02133 0.40 +0.0 2,194,963 + ECD_02133 0.42 +1.0 2,194,964 - ECD_02133 0.42 +0.6 2,194,977 + ECD_02133 0.43 +0.4 2,195,242 - ECD_02133 0.53 -0.3 2,195,328 + ECD_02133 0.57 -0.8 2,195,328 + ECD_02133 0.57 -0.0 2,195,349 - ECD_02133 0.58 -0.3 2,195,396 - ECD_02133 0.59 +0.4 2,195,396 - ECD_02133 0.59 -0.1 2,195,396 - ECD_02133 0.59 +0.8 2,195,396 - ECD_02133 0.59 +0.2 2,195,583 + ECD_02133 0.67 +1.2 2,195,584 - ECD_02133 0.67 -0.8 2,195,659 + ECD_02133 0.70 +0.7 2,195,675 - ECD_02133 0.71 -1.1 2,195,828 - ECD_02133 0.77 -1.8 2,195,836 + ECD_02133 0.77 +0.8 2,196,082 + ECD_02133 0.87 +1.6 2,196,129 + ECD_02133 0.89 +0.2 2,196,370 + +0.4 2,196,654 + +0.6 2,196,669 + +0.8 2,196,670 - -1.0 2,196,681 - -0.6 2,196,739 + ECD_02135 0.17 -0.5 2,196,740 - ECD_02135 0.18 -1.0 2,196,781 + ECD_02135 0.26 +0.2 2,196,803 - ECD_02135 0.30 +0.5
Or see this region's nucleotide sequence