Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01923 and ECD_01924 overlap by 1 nucleotides ECD_01924 and ECD_01925 overlap by 1 nucleotides ECD_01925 and ECD_01926 overlap by 1 nucleotides
ECD_01923: ECD_01923 - histidinol-phosphate aminotransferase, at 1,988,201 to 1,989,271
_01923
ECD_01924: ECD_01924 - histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase, at 1,989,271 to 1,990,338
_01924
ECD_01925: ECD_01925 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 1,990,338 to 1,990,928
_01925
ECD_01926: ECD_01926 - N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase, at 1,990,928 to 1,991,665
_01926
Position (kb)
1989
1990
1991 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1988.316 kb on - strand, within ECD_01923 at 1988.399 kb on + strand, within ECD_01923 at 1988.409 kb on - strand, within ECD_01923 at 1988.418 kb on + strand, within ECD_01923 at 1988.537 kb on + strand, within ECD_01923 at 1988.538 kb on - strand, within ECD_01923 at 1989.113 kb on - strand, within ECD_01923 at 1989.133 kb on + strand, within ECD_01923 at 1989.389 kb on + strand, within ECD_01924 at 1989.610 kb on + strand, within ECD_01924 at 1989.943 kb on + strand, within ECD_01924 at 1990.112 kb on - strand, within ECD_01924 at 1990.189 kb on + strand, within ECD_01924 at 1990.247 kb on + strand at 1990.336 kb on + strand at 1990.755 kb on + strand, within ECD_01925 at 1990.756 kb on - strand, within ECD_01925 at 1990.808 kb on + strand, within ECD_01925 at 1990.933 kb on + strand at 1990.944 kb on + strand at 1990.968 kb on + strand at 1991.298 kb on + strand, within ECD_01926
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 1,988,316 - ECD_01923 0.11 +0.8 1,988,399 + ECD_01923 0.18 -0.8 1,988,409 - ECD_01923 0.19 +0.5 1,988,418 + ECD_01923 0.20 -0.9 1,988,537 + ECD_01923 0.31 -0.0 1,988,538 - ECD_01923 0.31 +0.8 1,989,113 - ECD_01923 0.85 +2.2 1,989,133 + ECD_01923 0.87 -0.7 1,989,389 + ECD_01924 0.11 -1.7 1,989,610 + ECD_01924 0.32 -1.0 1,989,943 + ECD_01924 0.63 -0.2 1,990,112 - ECD_01924 0.79 -0.9 1,990,189 + ECD_01924 0.86 -0.1 1,990,247 + +0.3 1,990,336 + +1.4 1,990,755 + ECD_01925 0.71 -0.2 1,990,756 - ECD_01925 0.71 -1.1 1,990,808 + ECD_01925 0.80 -1.8 1,990,933 + -1.5 1,990,944 + -0.2 1,990,968 + -1.4 1,991,298 + ECD_01926 0.50 +0.2
Or see this region's nucleotide sequence