Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01895 and ECD_t00034 are separated by 453 nucleotides ECD_t00034 and ECD_01896 are separated by 100 nucleotides ECD_01896 and ECD_t00035 are separated by 4 nucleotides ECD_t00035 and ECD_01897 are separated by 37 nucleotides
ECD_01895: ECD_01895 - UPF0082 family protein, at 1,962,005 to 1,962,721
_01895
ECD_t00034: ECD_t00034 - tRNA-Asn, at 1,963,175 to 1,963,250
_t00034
ECD_01896: ECD_01896 - putative multdrug exporter, MATE family, at 1,963,351 to 1,964,994
_01896
ECD_t00035: ECD_t00035 - tRNA-Asn, at 1,964,999 to 1,965,074
_t00035
ECD_01897: ECD_01897 - ssuEADCB/tauABCD operon transcriptional activator, at 1,965,112 to 1,966,062
_01897
Position (kb) 1963
1964
1965 Strain fitness (log2 ratio) -1
0
1 at 1963.644 kb on + strand, within ECD_01896 at 1963.985 kb on - strand, within ECD_01896 at 1964.542 kb on - strand, within ECD_01896 at 1965.115 kb on + strand at 1965.397 kb on + strand, within ECD_01897 at 1965.558 kb on + strand, within ECD_01897 at 1965.828 kb on + strand, within ECD_01897
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 1,963,644 + ECD_01896 0.18 +0.2 1,963,985 - ECD_01896 0.39 -0.9 1,964,542 - ECD_01896 0.72 +0.4 1,965,115 + -0.2 1,965,397 + ECD_01897 0.30 +0.9 1,965,558 + ECD_01897 0.47 +1.4 1,965,828 + ECD_01897 0.75 +0.2
Or see this region's nucleotide sequence