Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_t00029 and ECD_t00030 are separated by 12 nucleotides ECD_t00030 and ECD_t00031 are separated by 53 nucleotides ECD_t00031 and ECD_01877 are separated by 151 nucleotides ECD_01877 and ECD_01878 are separated by 56 nucleotides ECD_01878 and ECD_01879 overlap by 4 nucleotides ECD_01879 and ECD_01880 are separated by 121 nucleotides ECD_01880 and ECD_01881 overlap by 82 nucleotides
ECD_t00029: ECD_t00029 - tRNA-Leu, at 1,936,957 to 1,937,043
_t00029
ECD_t00030: ECD_t00030 - tRNA-Cys, at 1,937,056 to 1,937,129
_t00030
ECD_t00031: ECD_t00031 - tRNA-Gly, at 1,937,183 to 1,937,258
_t00031
ECD_01877: ECD_01877 - phosphatidylglycerophosphate synthetase, at 1,937,410 to 1,937,958
_01877
ECD_01878: ECD_01878 - excinuclease UvrABC, endonuclease subunit, at 1,938,015 to 1,939,847
_01878
ECD_01879: ECD_01879 - response regulator in two-component regulatory system with BarA, at 1,939,844 to 1,940,353
_01879
ECD_01880: ECD_01880 - IS1 protein InsA, at 1,940,475 to 1,940,750
_01880
ECD_01881: ECD_01881 - IS1 protein InsB, at 1,940,669 to 1,941,172
_01881
Position (kb)
1938
1939
1940 Strain fitness (log2 ratio)
-2
-1
0
1 at 1937.292 kb on - strand at 1937.992 kb on - strand at 1938.124 kb on + strand at 1938.125 kb on - strand at 1938.370 kb on - strand, within ECD_01878 at 1938.460 kb on - strand, within ECD_01878 at 1938.961 kb on - strand, within ECD_01878 at 1939.003 kb on + strand, within ECD_01878 at 1939.209 kb on - strand, within ECD_01878 at 1939.435 kb on - strand, within ECD_01878 at 1939.466 kb on - strand, within ECD_01878 at 1939.597 kb on + strand, within ECD_01878 at 1939.598 kb on - strand, within ECD_01878 at 1939.644 kb on + strand, within ECD_01878 at 1939.777 kb on + strand at 1940.131 kb on - strand, within ECD_01879 at 1940.332 kb on + strand at 1940.333 kb on - strand at 1940.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 1,937,292 - -0.4 1,937,992 - +0.4 1,938,124 + +0.4 1,938,125 - +0.4 1,938,370 - ECD_01878 0.19 +0.4 1,938,460 - ECD_01878 0.24 -0.6 1,938,961 - ECD_01878 0.52 -2.5 1,939,003 + ECD_01878 0.54 -1.0 1,939,209 - ECD_01878 0.65 -2.0 1,939,435 - ECD_01878 0.77 -0.4 1,939,466 - ECD_01878 0.79 +1.6 1,939,597 + ECD_01878 0.86 -1.0 1,939,598 - ECD_01878 0.86 -0.1 1,939,644 + ECD_01878 0.89 +0.2 1,939,777 + +0.3 1,940,131 - ECD_01879 0.56 -0.9 1,940,332 + -0.1 1,940,333 - +0.5 1,940,346 - -0.2
Or see this region's nucleotide sequence