Strain Fitness in Escherichia coli BL21 around ECD_01878

Experiment: Bas29

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_t00029 and ECD_t00030 are separated by 12 nucleotidesECD_t00030 and ECD_t00031 are separated by 53 nucleotidesECD_t00031 and ECD_01877 are separated by 151 nucleotidesECD_01877 and ECD_01878 are separated by 56 nucleotidesECD_01878 and ECD_01879 overlap by 4 nucleotidesECD_01879 and ECD_01880 are separated by 121 nucleotidesECD_01880 and ECD_01881 overlap by 82 nucleotides ECD_t00029: ECD_t00029 - tRNA-Leu, at 1,936,957 to 1,937,043 _t00029 ECD_t00030: ECD_t00030 - tRNA-Cys, at 1,937,056 to 1,937,129 _t00030 ECD_t00031: ECD_t00031 - tRNA-Gly, at 1,937,183 to 1,937,258 _t00031 ECD_01877: ECD_01877 - phosphatidylglycerophosphate synthetase, at 1,937,410 to 1,937,958 _01877 ECD_01878: ECD_01878 - excinuclease UvrABC, endonuclease subunit, at 1,938,015 to 1,939,847 _01878 ECD_01879: ECD_01879 - response regulator in two-component regulatory system with BarA, at 1,939,844 to 1,940,353 _01879 ECD_01880: ECD_01880 - IS1 protein InsA, at 1,940,475 to 1,940,750 _01880 ECD_01881: ECD_01881 - IS1 protein InsB, at 1,940,669 to 1,941,172 _01881 Position (kb) 1938 1939 1940Strain fitness (log2 ratio) -2 -1 0 1at 1937.292 kb on - strandat 1937.992 kb on - strandat 1938.124 kb on + strandat 1938.125 kb on - strandat 1938.370 kb on - strand, within ECD_01878at 1938.460 kb on - strand, within ECD_01878at 1938.961 kb on - strand, within ECD_01878at 1939.003 kb on + strand, within ECD_01878at 1939.209 kb on - strand, within ECD_01878at 1939.435 kb on - strand, within ECD_01878at 1939.466 kb on - strand, within ECD_01878at 1939.597 kb on + strand, within ECD_01878at 1939.598 kb on - strand, within ECD_01878at 1939.644 kb on + strand, within ECD_01878at 1939.777 kb on + strandat 1940.131 kb on - strand, within ECD_01879at 1940.332 kb on + strandat 1940.333 kb on - strandat 1940.346 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
remove
1,937,292 - -0.4
1,937,992 - +0.4
1,938,124 + +0.4
1,938,125 - +0.4
1,938,370 - ECD_01878 0.19 +0.4
1,938,460 - ECD_01878 0.24 -0.6
1,938,961 - ECD_01878 0.52 -2.5
1,939,003 + ECD_01878 0.54 -1.0
1,939,209 - ECD_01878 0.65 -2.0
1,939,435 - ECD_01878 0.77 -0.4
1,939,466 - ECD_01878 0.79 +1.6
1,939,597 + ECD_01878 0.86 -1.0
1,939,598 - ECD_01878 0.86 -0.1
1,939,644 + ECD_01878 0.89 +0.2
1,939,777 + +0.3
1,940,131 - ECD_01879 0.56 -0.9
1,940,332 + -0.1
1,940,333 - +0.5
1,940,346 - -0.2

Or see this region's nucleotide sequence