Strain Fitness in Escherichia coli BL21 around ECD_01077

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01076 and ECD_01077 overlap by 1 nucleotidesECD_01077 and ECD_01078 are separated by 65 nucleotides ECD_01076: ECD_01076 - putative flagellar basal body protein, at 1,138,841 to 1,139,938 _01076 ECD_01077: ECD_01077 - flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase, at 1,139,938 to 1,140,879 _01077 ECD_01078: ECD_01078 - flagellar hook-filament junction protein 1, at 1,140,945 to 1,142,588 _01078 Position (kb) 1139 1140 1141Strain fitness (log2 ratio) -1 0 1at 1139.026 kb on + strand, within ECD_01076at 1139.029 kb on + strand, within ECD_01076at 1139.074 kb on + strand, within ECD_01076at 1139.074 kb on + strand, within ECD_01076at 1139.082 kb on + strand, within ECD_01076at 1139.197 kb on + strand, within ECD_01076at 1139.197 kb on + strand, within ECD_01076at 1139.197 kb on + strand, within ECD_01076at 1139.240 kb on + strand, within ECD_01076at 1139.240 kb on + strand, within ECD_01076at 1139.240 kb on + strand, within ECD_01076at 1139.296 kb on + strand, within ECD_01076at 1139.593 kb on + strand, within ECD_01076at 1139.605 kb on + strand, within ECD_01076at 1139.605 kb on + strand, within ECD_01076at 1139.685 kb on + strand, within ECD_01076at 1139.805 kb on + strand, within ECD_01076at 1139.805 kb on + strand, within ECD_01076at 1139.957 kb on + strandat 1139.999 kb on + strandat 1140.033 kb on + strand, within ECD_01077at 1140.145 kb on + strand, within ECD_01077at 1140.145 kb on + strand, within ECD_01077at 1140.147 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.153 kb on + strand, within ECD_01077at 1140.157 kb on + strand, within ECD_01077at 1140.157 kb on + strand, within ECD_01077at 1140.157 kb on + strand, within ECD_01077at 1140.354 kb on + strand, within ECD_01077at 1140.358 kb on + strand, within ECD_01077at 1140.358 kb on + strand, within ECD_01077at 1140.359 kb on - strand, within ECD_01077at 1140.529 kb on + strand, within ECD_01077at 1140.673 kb on + strand, within ECD_01077at 1140.850 kb on + strandat 1140.881 kb on + strandat 1140.912 kb on + strandat 1140.912 kb on + strandat 1140.959 kb on + strandat 1141.016 kb on + strandat 1141.019 kb on + strandat 1141.019 kb on + strandat 1141.031 kb on + strandat 1141.235 kb on + strand, within ECD_01078at 1141.458 kb on + strand, within ECD_01078at 1141.588 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.617 kb on + strand, within ECD_01078at 1141.722 kb on + strand, within ECD_01078

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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1,139,026 + ECD_01076 0.17 -0.2
1,139,029 + ECD_01076 0.17 -0.9
1,139,074 + ECD_01076 0.21 -0.8
1,139,074 + ECD_01076 0.21 -0.1
1,139,082 + ECD_01076 0.22 -1.1
1,139,197 + ECD_01076 0.32 +0.4
1,139,197 + ECD_01076 0.32 -0.3
1,139,197 + ECD_01076 0.32 -1.7
1,139,240 + ECD_01076 0.36 +1.2
1,139,240 + ECD_01076 0.36 +0.0
1,139,240 + ECD_01076 0.36 -1.5
1,139,296 + ECD_01076 0.41 -0.7
1,139,593 + ECD_01076 0.68 -1.0
1,139,605 + ECD_01076 0.70 +0.2
1,139,605 + ECD_01076 0.70 -0.3
1,139,685 + ECD_01076 0.77 +0.3
1,139,805 + ECD_01076 0.88 +0.1
1,139,805 + ECD_01076 0.88 -0.7
1,139,957 + +0.7
1,139,999 + -0.2
1,140,033 + ECD_01077 0.10 +1.4
1,140,145 + ECD_01077 0.22 +0.5
1,140,145 + ECD_01077 0.22 -0.1
1,140,147 + ECD_01077 0.22 -0.8
1,140,153 + ECD_01077 0.23 +0.5
1,140,153 + ECD_01077 0.23 -0.8
1,140,153 + ECD_01077 0.23 +0.8
1,140,153 + ECD_01077 0.23 -0.4
1,140,153 + ECD_01077 0.23 -0.0
1,140,153 + ECD_01077 0.23 +0.8
1,140,153 + ECD_01077 0.23 +0.0
1,140,157 + ECD_01077 0.23 +1.4
1,140,157 + ECD_01077 0.23 +0.1
1,140,157 + ECD_01077 0.23 +1.3
1,140,354 + ECD_01077 0.44 +0.3
1,140,358 + ECD_01077 0.45 +0.7
1,140,358 + ECD_01077 0.45 -0.2
1,140,359 - ECD_01077 0.45 +0.2
1,140,529 + ECD_01077 0.63 -0.8
1,140,673 + ECD_01077 0.78 +0.8
1,140,850 + -0.9
1,140,881 + +0.2
1,140,912 + +0.2
1,140,912 + -0.6
1,140,959 + -0.0
1,141,016 + -0.0
1,141,019 + +1.0
1,141,019 + -1.6
1,141,031 + +0.8
1,141,235 + ECD_01078 0.18 -0.7
1,141,458 + ECD_01078 0.31 +0.0
1,141,588 + ECD_01078 0.39 +0.5
1,141,617 + ECD_01078 0.41 -0.2
1,141,617 + ECD_01078 0.41 +0.1
1,141,617 + ECD_01078 0.41 -1.6
1,141,617 + ECD_01078 0.41 +0.8
1,141,722 + ECD_01078 0.47 +0.2

Or see this region's nucleotide sequence