Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01076 and ECD_01077 overlap by 1 nucleotides ECD_01077 and ECD_01078 are separated by 65 nucleotides
ECD_01076: ECD_01076 - putative flagellar basal body protein, at 1,138,841 to 1,139,938
_01076
ECD_01077: ECD_01077 - flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase, at 1,139,938 to 1,140,879
_01077
ECD_01078: ECD_01078 - flagellar hook-filament junction protein 1, at 1,140,945 to 1,142,588
_01078
Position (kb)
1139
1140
1141 Strain fitness (log2 ratio)
-1
0
1 at 1139.026 kb on + strand, within ECD_01076 at 1139.029 kb on + strand, within ECD_01076 at 1139.074 kb on + strand, within ECD_01076 at 1139.074 kb on + strand, within ECD_01076 at 1139.082 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.197 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.240 kb on + strand, within ECD_01076 at 1139.296 kb on + strand, within ECD_01076 at 1139.593 kb on + strand, within ECD_01076 at 1139.605 kb on + strand, within ECD_01076 at 1139.605 kb on + strand, within ECD_01076 at 1139.685 kb on + strand, within ECD_01076 at 1139.805 kb on + strand, within ECD_01076 at 1139.805 kb on + strand, within ECD_01076 at 1139.957 kb on + strand at 1139.999 kb on + strand at 1140.033 kb on + strand, within ECD_01077 at 1140.145 kb on + strand, within ECD_01077 at 1140.145 kb on + strand, within ECD_01077 at 1140.147 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.153 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.157 kb on + strand, within ECD_01077 at 1140.354 kb on + strand, within ECD_01077 at 1140.358 kb on + strand, within ECD_01077 at 1140.358 kb on + strand, within ECD_01077 at 1140.359 kb on - strand, within ECD_01077 at 1140.529 kb on + strand, within ECD_01077 at 1140.673 kb on + strand, within ECD_01077 at 1140.850 kb on + strand at 1140.881 kb on + strand at 1140.912 kb on + strand at 1140.912 kb on + strand at 1140.959 kb on + strand at 1141.016 kb on + strand at 1141.019 kb on + strand at 1141.019 kb on + strand at 1141.031 kb on + strand at 1141.235 kb on + strand, within ECD_01078 at 1141.458 kb on + strand, within ECD_01078 at 1141.588 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.722 kb on + strand, within ECD_01078
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 1,139,026 + ECD_01076 0.17 -0.2 1,139,029 + ECD_01076 0.17 -0.9 1,139,074 + ECD_01076 0.21 -0.8 1,139,074 + ECD_01076 0.21 -0.1 1,139,082 + ECD_01076 0.22 -1.1 1,139,197 + ECD_01076 0.32 +0.4 1,139,197 + ECD_01076 0.32 -0.3 1,139,197 + ECD_01076 0.32 -1.7 1,139,240 + ECD_01076 0.36 +1.2 1,139,240 + ECD_01076 0.36 +0.0 1,139,240 + ECD_01076 0.36 -1.5 1,139,296 + ECD_01076 0.41 -0.7 1,139,593 + ECD_01076 0.68 -1.0 1,139,605 + ECD_01076 0.70 +0.2 1,139,605 + ECD_01076 0.70 -0.3 1,139,685 + ECD_01076 0.77 +0.3 1,139,805 + ECD_01076 0.88 +0.1 1,139,805 + ECD_01076 0.88 -0.7 1,139,957 + +0.7 1,139,999 + -0.2 1,140,033 + ECD_01077 0.10 +1.4 1,140,145 + ECD_01077 0.22 +0.5 1,140,145 + ECD_01077 0.22 -0.1 1,140,147 + ECD_01077 0.22 -0.8 1,140,153 + ECD_01077 0.23 +0.5 1,140,153 + ECD_01077 0.23 -0.8 1,140,153 + ECD_01077 0.23 +0.8 1,140,153 + ECD_01077 0.23 -0.4 1,140,153 + ECD_01077 0.23 -0.0 1,140,153 + ECD_01077 0.23 +0.8 1,140,153 + ECD_01077 0.23 +0.0 1,140,157 + ECD_01077 0.23 +1.4 1,140,157 + ECD_01077 0.23 +0.1 1,140,157 + ECD_01077 0.23 +1.3 1,140,354 + ECD_01077 0.44 +0.3 1,140,358 + ECD_01077 0.45 +0.7 1,140,358 + ECD_01077 0.45 -0.2 1,140,359 - ECD_01077 0.45 +0.2 1,140,529 + ECD_01077 0.63 -0.8 1,140,673 + ECD_01077 0.78 +0.8 1,140,850 + -0.9 1,140,881 + +0.2 1,140,912 + +0.2 1,140,912 + -0.6 1,140,959 + -0.0 1,141,016 + -0.0 1,141,019 + +1.0 1,141,019 + -1.6 1,141,031 + +0.8 1,141,235 + ECD_01078 0.18 -0.7 1,141,458 + ECD_01078 0.31 +0.0 1,141,588 + ECD_01078 0.39 +0.5 1,141,617 + ECD_01078 0.41 -0.2 1,141,617 + ECD_01078 0.41 +0.1 1,141,617 + ECD_01078 0.41 -1.6 1,141,617 + ECD_01078 0.41 +0.8 1,141,722 + ECD_01078 0.47 +0.2
Or see this region's nucleotide sequence