Strain Fitness in Escherichia coli BL21 around ECD_01030

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01029 and ECD_t00024 are separated by 401 nucleotidesECD_t00024 and ECD_01030 are separated by 234 nucleotidesECD_01030 and ECD_01031 are separated by 54 nucleotidesECD_01031 and ECD_01032 are separated by 23 nucleotides ECD_01029: ECD_01029 - putative transposase-related protein, at 1,099,421 to 1,099,729 _01029 ECD_t00024: ECD_t00024 - tRNA-Ser, at 1,100,131 to 1,100,218 _t00024 ECD_01030: ECD_01030 - glyoxylate/hydroxypyruvate reductase A, at 1,100,453 to 1,101,391 _01030 ECD_01031: ECD_01031 - alkaline phosphatase, at 1,101,446 to 1,102,183 _01031 ECD_01032: ECD_01032 - redox enzyme maturation protein (REMP) chaperone for YcdX, at 1,102,207 to 1,102,761 _01032 Position (kb) 1100 1101 1102Strain fitness (log2 ratio) -2 -1 0 1 2at 1099.904 kb on + strandat 1100.253 kb on - strandat 1100.660 kb on - strand, within ECD_01030at 1100.756 kb on + strand, within ECD_01030at 1100.756 kb on + strand, within ECD_01030at 1101.445 kb on + strandat 1101.466 kb on + strandat 1101.466 kb on + strandat 1101.466 kb on + strandat 1101.466 kb on + strandat 1101.494 kb on + strandat 1101.494 kb on + strandat 1101.496 kb on + strandat 1101.512 kb on + strandat 1101.617 kb on - strand, within ECD_01031at 1101.667 kb on + strand, within ECD_01031at 1101.831 kb on + strand, within ECD_01031at 1101.831 kb on + strand, within ECD_01031at 1101.831 kb on + strand, within ECD_01031at 1101.861 kb on + strand, within ECD_01031at 1101.943 kb on + strand, within ECD_01031at 1102.200 kb on + strandat 1102.374 kb on + strand, within ECD_01032

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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1,099,904 + -0.6
1,100,253 - +0.2
1,100,660 - ECD_01030 0.22 -0.2
1,100,756 + ECD_01030 0.32 -0.0
1,100,756 + ECD_01030 0.32 -0.4
1,101,445 + +0.5
1,101,466 + -0.1
1,101,466 + +0.6
1,101,466 + +1.8
1,101,466 + -0.5
1,101,494 + -0.4
1,101,494 + +0.6
1,101,496 + +0.0
1,101,512 + +0.5
1,101,617 - ECD_01031 0.23 +1.7
1,101,667 + ECD_01031 0.30 -0.3
1,101,831 + ECD_01031 0.52 +2.1
1,101,831 + ECD_01031 0.52 +0.1
1,101,831 + ECD_01031 0.52 -2.4
1,101,861 + ECD_01031 0.56 +0.9
1,101,943 + ECD_01031 0.67 +0.4
1,102,200 + +0.5
1,102,374 + ECD_01032 0.30 -0.4

Or see this region's nucleotide sequence