Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01029 and ECD_t00024 are separated by 401 nucleotides ECD_t00024 and ECD_01030 are separated by 234 nucleotides ECD_01030 and ECD_01031 are separated by 54 nucleotides ECD_01031 and ECD_01032 are separated by 23 nucleotides
ECD_01029: ECD_01029 - putative transposase-related protein, at 1,099,421 to 1,099,729
_01029
ECD_t00024: ECD_t00024 - tRNA-Ser, at 1,100,131 to 1,100,218
_t00024
ECD_01030: ECD_01030 - glyoxylate/hydroxypyruvate reductase A, at 1,100,453 to 1,101,391
_01030
ECD_01031: ECD_01031 - alkaline phosphatase, at 1,101,446 to 1,102,183
_01031
ECD_01032: ECD_01032 - redox enzyme maturation protein (REMP) chaperone for YcdX, at 1,102,207 to 1,102,761
_01032
Position (kb)
1100
1101
1102 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1099.904 kb on + strand at 1100.253 kb on - strand at 1100.660 kb on - strand, within ECD_01030 at 1100.756 kb on + strand, within ECD_01030 at 1100.756 kb on + strand, within ECD_01030 at 1101.445 kb on + strand at 1101.466 kb on + strand at 1101.466 kb on + strand at 1101.466 kb on + strand at 1101.466 kb on + strand at 1101.494 kb on + strand at 1101.494 kb on + strand at 1101.496 kb on + strand at 1101.512 kb on + strand at 1101.617 kb on - strand, within ECD_01031 at 1101.667 kb on + strand, within ECD_01031 at 1101.831 kb on + strand, within ECD_01031 at 1101.831 kb on + strand, within ECD_01031 at 1101.831 kb on + strand, within ECD_01031 at 1101.861 kb on + strand, within ECD_01031 at 1101.943 kb on + strand, within ECD_01031 at 1102.200 kb on + strand at 1102.374 kb on + strand, within ECD_01032
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 1,099,904 + -0.6 1,100,253 - +0.2 1,100,660 - ECD_01030 0.22 -0.2 1,100,756 + ECD_01030 0.32 -0.0 1,100,756 + ECD_01030 0.32 -0.4 1,101,445 + +0.5 1,101,466 + -0.1 1,101,466 + +0.6 1,101,466 + +1.8 1,101,466 + -0.5 1,101,494 + -0.4 1,101,494 + +0.6 1,101,496 + +0.0 1,101,512 + +0.5 1,101,617 - ECD_01031 0.23 +1.7 1,101,667 + ECD_01031 0.30 -0.3 1,101,831 + ECD_01031 0.52 +2.1 1,101,831 + ECD_01031 0.52 +0.1 1,101,831 + ECD_01031 0.52 -2.4 1,101,861 + ECD_01031 0.56 +0.9 1,101,943 + ECD_01031 0.67 +0.4 1,102,200 + +0.5 1,102,374 + ECD_01032 0.30 -0.4
Or see this region's nucleotide sequence