Strain Fitness in Escherichia coli BL21 around ECD_01019

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01018 and ECD_01019 are separated by 533 nucleotidesECD_01019 and ECD_01020 are separated by 57 nucleotides ECD_01018: ECD_01018 - proline:sodium symporter, at 1,083,587 to 1,085,095 _01018 ECD_01019: ECD_01019 - putative membrane protein, at 1,085,629 to 1,086,468 _01019 ECD_01020: ECD_01020 - inactive ferrous ion transporter EfeUOB, at 1,086,526 to 1,087,653 _01020 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -2 -1 0 1at 1084.656 kb on + strand, within ECD_01018at 1084.963 kb on + strandat 1084.993 kb on + strandat 1085.057 kb on + strandat 1085.283 kb on - strandat 1085.337 kb on + strandat 1085.338 kb on - strandat 1085.602 kb on + strandat 1085.658 kb on + strandat 1085.659 kb on - strandat 1085.710 kb on + strandat 1085.710 kb on + strandat 1086.114 kb on + strand, within ECD_01019at 1086.291 kb on + strand, within ECD_01019at 1086.473 kb on + strandat 1086.473 kb on + strandat 1086.516 kb on + strandat 1086.825 kb on + strand, within ECD_01020at 1086.940 kb on + strand, within ECD_01020at 1086.940 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1086.949 kb on + strand, within ECD_01020at 1087.064 kb on - strand, within ECD_01020at 1087.244 kb on - strand, within ECD_01020at 1087.245 kb on + strand, within ECD_01020at 1087.245 kb on + strand, within ECD_01020at 1087.404 kb on + strand, within ECD_01020

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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1,084,656 + ECD_01018 0.71 -1.5
1,084,963 + +0.2
1,084,993 + +0.1
1,085,057 + +0.9
1,085,283 - -0.3
1,085,337 + -0.3
1,085,338 - -0.3
1,085,602 + -0.6
1,085,658 + +0.6
1,085,659 - +0.1
1,085,710 + -0.8
1,085,710 + +0.2
1,086,114 + ECD_01019 0.58 -0.5
1,086,291 + ECD_01019 0.79 -0.8
1,086,473 + +0.5
1,086,473 + -0.7
1,086,516 + -0.6
1,086,825 + ECD_01020 0.27 +0.1
1,086,940 + ECD_01020 0.37 -0.0
1,086,940 + ECD_01020 0.37 -0.2
1,086,949 + ECD_01020 0.38 -0.6
1,086,949 + ECD_01020 0.38 +0.6
1,086,949 + ECD_01020 0.38 -2.2
1,087,064 - ECD_01020 0.48 +0.9
1,087,244 - ECD_01020 0.64 +0.6
1,087,245 + ECD_01020 0.64 +0.9
1,087,245 + ECD_01020 0.64 +0.2
1,087,404 + ECD_01020 0.78 +0.6

Or see this region's nucleotide sequence