Strain Fitness in Escherichia coli BL21 around ECD_00984

Experiment: Bas29

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00983 and ECD_00984 are separated by 114 nucleotidesECD_00984 and ECD_00985 are separated by 19 nucleotidesECD_00985 and ECD_00986 overlap by 13 nucleotides ECD_00983: ECD_00983 - phosphoanhydride phosphorylase, at 1,045,706 to 1,047,004 _00983 ECD_00984: ECD_00984 - tyrosine-protein kinase, role in O-antigen capsule formation, at 1,047,119 to 1,049,299 _00984 ECD_00985: ECD_00985 - O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase, at 1,049,319 to 1,049,765 _00985 ECD_00986: ECD_00986 - putative O-antigen capsule outer membrane auxillary protein export channel, at 1,049,753 to 1,050,892 _00986 Position (kb) 1047 1048 1049 1050Strain fitness (log2 ratio) -2 -1 0 1at 1046.122 kb on + strand, within ECD_00983at 1046.146 kb on + strand, within ECD_00983at 1046.147 kb on - strand, within ECD_00983at 1046.308 kb on + strand, within ECD_00983at 1046.636 kb on + strand, within ECD_00983at 1046.668 kb on + strand, within ECD_00983at 1046.879 kb on - strandat 1047.150 kb on + strandat 1047.154 kb on + strandat 1047.154 kb on + strandat 1047.215 kb on - strandat 1047.725 kb on - strand, within ECD_00984at 1048.130 kb on - strand, within ECD_00984at 1048.145 kb on + strand, within ECD_00984at 1048.279 kb on - strand, within ECD_00984at 1048.300 kb on - strand, within ECD_00984at 1048.574 kb on - strand, within ECD_00984at 1048.724 kb on - strand, within ECD_00984at 1048.778 kb on - strand, within ECD_00984at 1048.812 kb on + strand, within ECD_00984at 1048.812 kb on + strand, within ECD_00984at 1049.122 kb on + strandat 1049.308 kb on - strandat 1049.495 kb on + strand, within ECD_00985at 1049.665 kb on - strand, within ECD_00985

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
remove
1,046,122 + ECD_00983 0.32 +1.0
1,046,146 + ECD_00983 0.34 +0.0
1,046,147 - ECD_00983 0.34 -0.6
1,046,308 + ECD_00983 0.46 +0.8
1,046,636 + ECD_00983 0.72 +0.4
1,046,668 + ECD_00983 0.74 +0.5
1,046,879 - +1.2
1,047,150 + +0.4
1,047,154 + +1.2
1,047,154 + +0.0
1,047,215 - +1.6
1,047,725 - ECD_00984 0.28 -1.4
1,048,130 - ECD_00984 0.46 -2.1
1,048,145 + ECD_00984 0.47 -0.4
1,048,279 - ECD_00984 0.53 +0.1
1,048,300 - ECD_00984 0.54 -0.6
1,048,574 - ECD_00984 0.67 -0.5
1,048,724 - ECD_00984 0.74 -1.5
1,048,778 - ECD_00984 0.76 -1.7
1,048,812 + ECD_00984 0.78 +0.5
1,048,812 + ECD_00984 0.78 +0.2
1,049,122 + +1.1
1,049,308 - -0.7
1,049,495 + ECD_00985 0.39 +0.7
1,049,665 - ECD_00985 0.77 +0.5

Or see this region's nucleotide sequence