Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00819 and ECD_00826 are separated by 152 nucleotides ECD_00826 and ECD_00827 overlap by 62 nucleotides ECD_00827 and ECD_00828 are separated by 192 nucleotides ECD_00828 and ECD_00829 are separated by 271 nucleotides ECD_00829 and ECD_00830 are separated by 36 nucleotides
ECD_00819: ECD_00819 - hypothetical protein, at 874,858 to 876,303
_00819
ECD_00826: ECD_00826 - hypothetical protein, at 876,456 to 876,644
_00826
ECD_00827: ECD_00827 - Prophage protein, at 876,583 to 876,888
_00827
ECD_00828: ECD_00828 - hypothetical protein, at 877,081 to 877,416
_00828
ECD_00829: ECD_00829 - hypothetical protein, at 877,688 to 877,852
_00829
ECD_00830: ECD_00830 - hypothetical protein, at 877,889 to 878,812
_00830
Position (kb) 877
878 Strain fitness (log2 ratio) -2
-1
0
1 at 876.126 kb on + strand, within ECD_00819 at 876.222 kb on + strand at 876.282 kb on + strand at 876.887 kb on - strand at 876.948 kb on + strand at 877.077 kb on - strand at 877.083 kb on - strand at 877.184 kb on - strand, within ECD_00828 at 877.351 kb on - strand, within ECD_00828 at 877.501 kb on - strand at 877.555 kb on + strand at 877.760 kb on - strand, within ECD_00829
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 876,126 + ECD_00819 0.88 -1.4 876,222 + +0.8 876,282 + +0.0 876,887 - +0.5 876,948 + +0.3 877,077 - +0.3 877,083 - -1.0 877,184 - ECD_00828 0.31 -0.4 877,351 - ECD_00828 0.80 -2.0 877,501 - +0.4 877,555 + +0.1 877,760 - ECD_00829 0.44 +0.8
Or see this region's nucleotide sequence