Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00495 and ECD_00496 are separated by 9 nucleotides ECD_00496 and ECD_00497 are separated by 214 nucleotides ECD_00497 and ECD_00498 overlap by 1 nucleotides ECD_00498 and ECD_00499 overlap by 8 nucleotides
ECD_00495: ECD_00495 - inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; UPF0098 family secreted protein, at 539,488 to 540,039
_00495
ECD_00496: ECD_00496 - DLP12 prophage; putative DNA-binding transcriptional regulator, at 540,049 to 540,846
_00496
ECD_00497: ECD_00497 - DLP12 prophage; uncharacterized protein, at 541,061 to 541,516
_00497
ECD_00498: ECD_00498 - DLP12 prophage; conserved protein, at 541,516 to 541,686
_00498
ECD_00499: ECD_00499 - DLP12 prophage; uncharacterized protein, at 541,679 to 541,969
_00499
Position (kb) 540
541 Strain fitness (log2 ratio) -1
0
1 at 539.637 kb on + strand, within ECD_00495 at 539.637 kb on + strand, within ECD_00495 at 539.699 kb on + strand, within ECD_00495 at 539.773 kb on + strand, within ECD_00495 at 539.889 kb on + strand, within ECD_00495 at 540.069 kb on + strand at 540.613 kb on + strand, within ECD_00496 at 540.632 kb on + strand, within ECD_00496 at 540.908 kb on + strand at 540.962 kb on + strand at 541.241 kb on + strand, within ECD_00497 at 541.308 kb on - strand, within ECD_00497 at 541.308 kb on - strand, within ECD_00497 at 541.308 kb on - strand, within ECD_00497 at 541.355 kb on - strand, within ECD_00497 at 541.409 kb on + strand, within ECD_00497 at 541.409 kb on + strand, within ECD_00497 at 541.409 kb on + strand, within ECD_00497 at 541.409 kb on + strand, within ECD_00497 at 541.409 kb on + strand, within ECD_00497 at 541.410 kb on - strand, within ECD_00497 at 541.410 kb on - strand, within ECD_00497 at 541.410 kb on - strand, within ECD_00497 at 541.410 kb on - strand, within ECD_00497 at 541.424 kb on - strand, within ECD_00497 at 541.515 kb on - strand at 541.555 kb on + strand, within ECD_00498 at 541.556 kb on - strand, within ECD_00498 at 541.556 kb on - strand, within ECD_00498 at 541.562 kb on + strand, within ECD_00498 at 541.563 kb on - strand, within ECD_00498 at 541.575 kb on + strand, within ECD_00498 at 541.575 kb on + strand, within ECD_00498 at 541.582 kb on - strand, within ECD_00498 at 541.627 kb on - strand, within ECD_00498 at 541.742 kb on - strand, within ECD_00499
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 539,637 + ECD_00495 0.27 +0.6 539,637 + ECD_00495 0.27 +0.7 539,699 + ECD_00495 0.38 -0.6 539,773 + ECD_00495 0.52 +1.5 539,889 + ECD_00495 0.73 -1.1 540,069 + +0.0 540,613 + ECD_00496 0.71 -0.6 540,632 + ECD_00496 0.73 -0.4 540,908 + +1.5 540,962 + +1.6 541,241 + ECD_00497 0.39 +0.3 541,308 - ECD_00497 0.54 -0.0 541,308 - ECD_00497 0.54 +0.7 541,308 - ECD_00497 0.54 +0.2 541,355 - ECD_00497 0.64 -0.4 541,409 + ECD_00497 0.76 -0.5 541,409 + ECD_00497 0.76 +0.6 541,409 + ECD_00497 0.76 -0.9 541,409 + ECD_00497 0.76 +0.2 541,409 + ECD_00497 0.76 -0.5 541,410 - ECD_00497 0.77 -0.2 541,410 - ECD_00497 0.77 +1.2 541,410 - ECD_00497 0.77 +0.2 541,410 - ECD_00497 0.77 -0.8 541,424 - ECD_00497 0.80 -0.9 541,515 - +0.3 541,555 + ECD_00498 0.23 +0.4 541,556 - ECD_00498 0.23 -1.0 541,556 - ECD_00498 0.23 +0.3 541,562 + ECD_00498 0.27 -1.0 541,563 - ECD_00498 0.27 -1.6 541,575 + ECD_00498 0.35 +0.6 541,575 + ECD_00498 0.35 -0.5 541,582 - ECD_00498 0.39 -0.6 541,627 - ECD_00498 0.65 -0.4 541,742 - ECD_00499 0.22 +0.4
Or see this region's nucleotide sequence