Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00337 and ECD_00338 are separated by 71 nucleotides ECD_00338 and ECD_00339 are separated by 207 nucleotides ECD_00339 and ECD_00340 are separated by 167 nucleotides ECD_00340 and ECD_00341 overlap by 82 nucleotides ECD_00341 and ECD_00342 are separated by 69 nucleotides
ECD_00337: ECD_00337 - AroM family protein, at 372,053 to 372,730
_00337
ECD_00338: ECD_00338 - UPF0345 family protein, at 372,802 to 373,086
_00338
ECD_00339: ECD_00339 - hypothetical protein, at 373,294 to 373,575
_00339
ECD_00340: ECD_00340 - IS1 protein InsB, at 373,743 to 374,246
_00340
ECD_00341: ECD_00341 - IS1 protein InsA, at 374,165 to 374,440
_00341
ECD_00342: ECD_00342 - nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function, at 374,510 to 375,421
_00342
Position (kb) 373
374 Strain fitness (log2 ratio) -2
-1
0
1
2 at 372.334 kb on + strand, within ECD_00337 at 372.335 kb on - strand, within ECD_00337 at 372.337 kb on - strand, within ECD_00337 at 372.339 kb on + strand, within ECD_00337 at 372.365 kb on - strand, within ECD_00337 at 372.427 kb on + strand, within ECD_00337 at 372.693 kb on + strand at 372.761 kb on + strand at 372.771 kb on + strand at 372.888 kb on + strand, within ECD_00338 at 372.994 kb on + strand, within ECD_00338 at 372.994 kb on + strand, within ECD_00338 at 372.995 kb on - strand, within ECD_00338 at 373.212 kb on + strand at 373.213 kb on - strand at 373.348 kb on - strand, within ECD_00339 at 373.405 kb on - strand, within ECD_00339 at 373.463 kb on + strand, within ECD_00339 at 373.463 kb on + strand, within ECD_00339 at 373.469 kb on + strand, within ECD_00339 at 373.499 kb on + strand, within ECD_00339 at 373.616 kb on + strand at 373.616 kb on + strand at 373.616 kb on + strand at 373.617 kb on - strand at 373.617 kb on - strand at 373.654 kb on - strand at 373.659 kb on + strand at 373.660 kb on - strand at 374.465 kb on + strand at 374.512 kb on - strand at 374.512 kb on - strand at 374.531 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 372,334 + ECD_00337 0.41 -0.5 372,335 - ECD_00337 0.42 -0.1 372,337 - ECD_00337 0.42 -0.3 372,339 + ECD_00337 0.42 -0.7 372,365 - ECD_00337 0.46 -1.1 372,427 + ECD_00337 0.55 +1.9 372,693 + -2.3 372,761 + -0.0 372,771 + -0.7 372,888 + ECD_00338 0.30 +0.6 372,994 + ECD_00338 0.67 +1.2 372,994 + ECD_00338 0.67 -0.1 372,995 - ECD_00338 0.68 +1.1 373,212 + -0.1 373,213 - +1.1 373,348 - ECD_00339 0.19 -0.7 373,405 - ECD_00339 0.39 -1.5 373,463 + ECD_00339 0.60 -0.9 373,463 + ECD_00339 0.60 -0.1 373,469 + ECD_00339 0.62 -0.7 373,499 + ECD_00339 0.73 +0.9 373,616 + -0.1 373,616 + +0.9 373,616 + -0.2 373,617 - +0.8 373,617 - +0.6 373,654 - +0.7 373,659 + -0.6 373,660 - -0.2 374,465 + +1.4 374,512 - -0.2 374,512 - +0.3 374,531 + +1.1
Or see this region's nucleotide sequence