Strain Fitness in Escherichia coli BL21 around ECD_00249

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00247 and ECD_00248 are separated by 312 nucleotidesECD_00248 and ECD_00249 overlap by 32 nucleotidesECD_00249 and ECD_00250 overlap by 11 nucleotides ECD_00247: ECD_00247 - UPF0153 cysteine cluster protein, at 274,038 to 274,367 _00247 ECD_00248: ECD_00248 - ECP production pilus chaperone, at 274,680 to 275,390 _00248 ECD_00249: ECD_00249 - polymerized tip adhesin of ECP fibers, at 275,359 to 277,002 _00249 ECD_00250: ECD_00250 - ECP production outer membrane protein, at 276,992 to 279,517 _00250 Position (kb) 275 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 274.378 kb on + strandat 274.379 kb on - strandat 274.379 kb on - strandat 274.409 kb on - strandat 274.415 kb on + strandat 274.415 kb on + strandat 274.415 kb on + strandat 274.416 kb on - strandat 274.419 kb on + strandat 274.419 kb on + strandat 274.420 kb on - strandat 274.420 kb on - strandat 274.428 kb on - strandat 274.493 kb on + strandat 274.497 kb on + strandat 274.500 kb on + strandat 274.501 kb on - strandat 274.511 kb on + strandat 274.512 kb on - strandat 274.523 kb on + strandat 274.523 kb on + strandat 274.524 kb on - strandat 274.739 kb on + strandat 274.771 kb on - strand, within ECD_00248at 274.804 kb on - strand, within ECD_00248at 274.807 kb on + strand, within ECD_00248at 274.851 kb on - strand, within ECD_00248at 274.858 kb on - strand, within ECD_00248at 274.862 kb on + strand, within ECD_00248at 274.863 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.884 kb on - strand, within ECD_00248at 274.887 kb on + strand, within ECD_00248at 274.887 kb on + strand, within ECD_00248at 274.888 kb on - strand, within ECD_00248at 274.920 kb on - strand, within ECD_00248at 274.942 kb on - strand, within ECD_00248at 274.945 kb on - strand, within ECD_00248at 275.087 kb on - strand, within ECD_00248at 275.098 kb on + strand, within ECD_00248at 275.193 kb on - strand, within ECD_00248at 275.198 kb on + strand, within ECD_00248at 275.218 kb on + strand, within ECD_00248at 275.360 kb on + strandat 275.360 kb on + strandat 275.361 kb on - strandat 275.364 kb on + strandat 275.365 kb on - strandat 275.438 kb on - strandat 275.493 kb on + strandat 275.520 kb on + strandat 275.520 kb on + strandat 275.520 kb on + strandat 275.521 kb on - strandat 275.521 kb on - strandat 275.681 kb on + strand, within ECD_00249at 275.681 kb on + strand, within ECD_00249at 275.681 kb on + strand, within ECD_00249at 275.682 kb on - strand, within ECD_00249at 275.767 kb on - strand, within ECD_00249at 275.805 kb on - strand, within ECD_00249at 275.830 kb on - strand, within ECD_00249at 275.830 kb on - strand, within ECD_00249at 275.830 kb on - strand, within ECD_00249at 275.830 kb on - strand, within ECD_00249at 275.831 kb on + strand, within ECD_00249at 275.832 kb on - strand, within ECD_00249at 275.832 kb on - strand, within ECD_00249at 275.847 kb on + strand, within ECD_00249at 275.950 kb on + strand, within ECD_00249at 275.950 kb on + strand, within ECD_00249at 275.951 kb on - strand, within ECD_00249at 276.023 kb on + strand, within ECD_00249at 276.023 kb on + strand, within ECD_00249at 276.059 kb on + strand, within ECD_00249at 276.059 kb on + strand, within ECD_00249at 276.060 kb on - strand, within ECD_00249at 276.060 kb on - strand, within ECD_00249at 276.065 kb on + strand, within ECD_00249at 276.072 kb on + strand, within ECD_00249at 276.118 kb on - strand, within ECD_00249at 276.169 kb on + strand, within ECD_00249at 276.172 kb on - strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.212 kb on + strand, within ECD_00249at 276.225 kb on + strand, within ECD_00249at 276.225 kb on + strand, within ECD_00249at 276.232 kb on + strand, within ECD_00249at 276.232 kb on + strand, within ECD_00249at 276.336 kb on + strand, within ECD_00249at 276.336 kb on + strand, within ECD_00249at 276.337 kb on - strand, within ECD_00249at 276.350 kb on - strand, within ECD_00249at 276.437 kb on + strand, within ECD_00249at 276.437 kb on + strand, within ECD_00249at 276.438 kb on - strand, within ECD_00249at 276.474 kb on + strand, within ECD_00249at 276.475 kb on - strand, within ECD_00249at 276.507 kb on - strand, within ECD_00249at 276.625 kb on - strand, within ECD_00249at 276.639 kb on - strand, within ECD_00249at 276.700 kb on - strand, within ECD_00249at 276.717 kb on + strand, within ECD_00249at 276.788 kb on + strand, within ECD_00249at 276.985 kb on + strandat 277.389 kb on - strand, within ECD_00250at 277.389 kb on - strand, within ECD_00250at 277.428 kb on + strand, within ECD_00250at 277.429 kb on - strand, within ECD_00250at 277.429 kb on - strand, within ECD_00250at 277.432 kb on + strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.433 kb on - strand, within ECD_00250at 277.512 kb on - strand, within ECD_00250at 277.558 kb on + strand, within ECD_00250at 277.621 kb on + strand, within ECD_00250at 277.861 kb on + strand, within ECD_00250at 277.861 kb on + strand, within ECD_00250at 277.862 kb on - strand, within ECD_00250at 277.864 kb on - strand, within ECD_00250at 277.897 kb on + strand, within ECD_00250at 277.899 kb on + strand, within ECD_00250at 277.899 kb on + strand, within ECD_00250at 277.963 kb on - strand, within ECD_00250at 277.975 kb on - strand, within ECD_00250at 277.975 kb on - strand, within ECD_00250

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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274,378 + +0.6
274,379 - -0.9
274,379 - +0.8
274,409 - -1.7
274,415 + +0.1
274,415 + -0.5
274,415 + -0.2
274,416 - +0.3
274,419 + -1.1
274,419 + -1.2
274,420 - -0.2
274,420 - -0.3
274,428 - -0.1
274,493 + +0.7
274,497 + -0.8
274,500 + +0.7
274,501 - -0.3
274,511 + +1.1
274,512 - -0.2
274,523 + +0.3
274,523 + -0.2
274,524 - -0.1
274,739 + -0.3
274,771 - ECD_00248 0.13 -1.0
274,804 - ECD_00248 0.17 +0.1
274,807 + ECD_00248 0.18 +0.9
274,851 - ECD_00248 0.24 -0.3
274,858 - ECD_00248 0.25 -0.2
274,862 + ECD_00248 0.26 +0.7
274,863 - ECD_00248 0.26 -0.1
274,884 - ECD_00248 0.29 -0.5
274,884 - ECD_00248 0.29 -0.7
274,884 - ECD_00248 0.29 +1.2
274,884 - ECD_00248 0.29 -0.1
274,887 + ECD_00248 0.29 +0.8
274,887 + ECD_00248 0.29 -0.3
274,888 - ECD_00248 0.29 +0.1
274,920 - ECD_00248 0.34 +1.0
274,942 - ECD_00248 0.37 +0.4
274,945 - ECD_00248 0.37 -1.1
275,087 - ECD_00248 0.57 -1.2
275,098 + ECD_00248 0.59 -0.3
275,193 - ECD_00248 0.72 +0.0
275,198 + ECD_00248 0.73 +0.2
275,218 + ECD_00248 0.76 +1.1
275,360 + +0.7
275,360 + +1.5
275,361 - -0.5
275,364 + +0.2
275,365 - +0.1
275,438 - -1.0
275,493 + +0.9
275,520 + -0.2
275,520 + +0.9
275,520 + -0.2
275,521 - +0.4
275,521 - +0.6
275,681 + ECD_00249 0.20 +0.9
275,681 + ECD_00249 0.20 +0.3
275,681 + ECD_00249 0.20 -0.8
275,682 - ECD_00249 0.20 -0.8
275,767 - ECD_00249 0.25 +0.2
275,805 - ECD_00249 0.27 -1.1
275,830 - ECD_00249 0.29 +0.6
275,830 - ECD_00249 0.29 +0.2
275,830 - ECD_00249 0.29 +0.6
275,830 - ECD_00249 0.29 +0.8
275,831 + ECD_00249 0.29 -0.1
275,832 - ECD_00249 0.29 +0.7
275,832 - ECD_00249 0.29 +0.4
275,847 + ECD_00249 0.30 -1.9
275,950 + ECD_00249 0.36 +0.4
275,950 + ECD_00249 0.36 -0.1
275,951 - ECD_00249 0.36 +0.9
276,023 + ECD_00249 0.40 -0.3
276,023 + ECD_00249 0.40 -0.7
276,059 + ECD_00249 0.43 +0.5
276,059 + ECD_00249 0.43 +0.4
276,060 - ECD_00249 0.43 +1.9
276,060 - ECD_00249 0.43 +0.7
276,065 + ECD_00249 0.43 +1.0
276,072 + ECD_00249 0.43 -0.4
276,118 - ECD_00249 0.46 +0.3
276,169 + ECD_00249 0.49 -0.0
276,172 - ECD_00249 0.49 +0.4
276,212 + ECD_00249 0.52 -0.4
276,212 + ECD_00249 0.52 -0.2
276,212 + ECD_00249 0.52 +0.9
276,212 + ECD_00249 0.52 +0.9
276,225 + ECD_00249 0.53 +0.2
276,225 + ECD_00249 0.53 +0.9
276,232 + ECD_00249 0.53 +0.3
276,232 + ECD_00249 0.53 +1.2
276,336 + ECD_00249 0.59 +1.2
276,336 + ECD_00249 0.59 -1.2
276,337 - ECD_00249 0.59 -1.3
276,350 - ECD_00249 0.60 +0.5
276,437 + ECD_00249 0.66 -0.8
276,437 + ECD_00249 0.66 +0.1
276,438 - ECD_00249 0.66 +0.9
276,474 + ECD_00249 0.68 -0.3
276,475 - ECD_00249 0.68 -2.2
276,507 - ECD_00249 0.70 -0.7
276,625 - ECD_00249 0.77 -1.4
276,639 - ECD_00249 0.78 -0.2
276,700 - ECD_00249 0.82 +0.2
276,717 + ECD_00249 0.83 -0.5
276,788 + ECD_00249 0.87 +0.3
276,985 + -0.2
277,389 - ECD_00250 0.16 -0.3
277,389 - ECD_00250 0.16 -0.9
277,428 + ECD_00250 0.17 +0.0
277,429 - ECD_00250 0.17 +0.4
277,429 - ECD_00250 0.17 -1.7
277,432 + ECD_00250 0.17 -0.3
277,433 - ECD_00250 0.17 -0.2
277,433 - ECD_00250 0.17 -0.5
277,433 - ECD_00250 0.17 +0.8
277,433 - ECD_00250 0.17 +0.3
277,433 - ECD_00250 0.17 +0.4
277,433 - ECD_00250 0.17 -0.2
277,433 - ECD_00250 0.17 +0.2
277,433 - ECD_00250 0.17 +0.4
277,512 - ECD_00250 0.21 +1.1
277,558 + ECD_00250 0.22 +0.2
277,621 + ECD_00250 0.25 -0.1
277,861 + ECD_00250 0.34 -0.8
277,861 + ECD_00250 0.34 +0.4
277,862 - ECD_00250 0.34 +0.5
277,864 - ECD_00250 0.35 +0.9
277,897 + ECD_00250 0.36 +0.4
277,899 + ECD_00250 0.36 -0.4
277,899 + ECD_00250 0.36 -0.3
277,963 - ECD_00250 0.38 -0.6
277,975 - ECD_00250 0.39 +0.5
277,975 - ECD_00250 0.39 +0.3

Or see this region's nucleotide sequence