Strain Fitness in Escherichia coli BL21 around ECD_03418

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03417 and ECD_03418 are separated by 365 nucleotides ECD_03417: ECD_03417 - D-xylose isomerase, at 3,591,597 to 3,592,919 _03417 ECD_03418: ECD_03418 - D-xylose transporter subunit, at 3,593,285 to 3,594,277 _03418 Position (kb) 3593 3594 3595Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3592.327 kb on - strand, within ECD_03417at 3592.366 kb on + strand, within ECD_03417at 3592.367 kb on - strand, within ECD_03417at 3592.386 kb on - strand, within ECD_03417at 3592.568 kb on + strand, within ECD_03417at 3592.576 kb on + strand, within ECD_03417at 3592.577 kb on - strand, within ECD_03417at 3592.627 kb on + strand, within ECD_03417at 3592.641 kb on + strand, within ECD_03417at 3592.642 kb on - strand, within ECD_03417at 3592.642 kb on - strand, within ECD_03417at 3592.642 kb on - strand, within ECD_03417at 3592.642 kb on - strand, within ECD_03417at 3592.642 kb on - strand, within ECD_03417at 3592.642 kb on - strand, within ECD_03417at 3592.677 kb on - strand, within ECD_03417at 3592.745 kb on + strand, within ECD_03417at 3592.809 kb on - strandat 3592.809 kb on - strandat 3592.999 kb on - strandat 3593.126 kb on - strandat 3593.332 kb on + strandat 3593.420 kb on - strand, within ECD_03418at 3593.573 kb on - strand, within ECD_03418at 3593.610 kb on + strand, within ECD_03418at 3593.729 kb on + strand, within ECD_03418at 3593.729 kb on + strand, within ECD_03418at 3593.755 kb on - strand, within ECD_03418at 3593.758 kb on + strand, within ECD_03418at 3593.808 kb on - strand, within ECD_03418at 3593.911 kb on + strand, within ECD_03418at 3593.928 kb on + strand, within ECD_03418at 3593.929 kb on - strand, within ECD_03418at 3593.929 kb on - strand, within ECD_03418at 3593.973 kb on + strand, within ECD_03418at 3594.034 kb on + strand, within ECD_03418at 3594.065 kb on - strand, within ECD_03418at 3594.074 kb on + strand, within ECD_03418at 3594.075 kb on - strand, within ECD_03418at 3594.075 kb on - strand, within ECD_03418at 3594.076 kb on + strand, within ECD_03418at 3594.076 kb on + strand, within ECD_03418at 3594.077 kb on - strand, within ECD_03418at 3594.082 kb on + strand, within ECD_03418at 3594.085 kb on + strand, within ECD_03418at 3594.085 kb on + strand, within ECD_03418at 3594.086 kb on - strand, within ECD_03418at 3594.086 kb on - strand, within ECD_03418at 3594.086 kb on - strand, within ECD_03418at 3594.100 kb on + strand, within ECD_03418at 3594.100 kb on + strand, within ECD_03418at 3594.155 kb on - strand, within ECD_03418at 3594.241 kb on - strandat 3594.245 kb on - strandat 3594.340 kb on + strandat 3594.340 kb on + strandat 3594.340 kb on + strandat 3594.341 kb on - strandat 3594.360 kb on + strandat 3594.361 kb on - strandat 3594.365 kb on - strandat 3594.509 kb on + strandat 3594.509 kb on + strandat 3594.510 kb on - strandat 3594.513 kb on + strandat 3594.528 kb on + strandat 3594.529 kb on - strandat 3594.676 kb on + strandat 3594.699 kb on + strandat 3594.765 kb on - strandat 3594.782 kb on - strandat 3594.782 kb on - strandat 3594.824 kb on + strandat 3594.825 kb on - strandat 3594.828 kb on - strandat 3594.844 kb on + strandat 3594.871 kb on + strandat 3594.872 kb on - strandat 3594.905 kb on + strandat 3594.938 kb on + strandat 3594.939 kb on - strandat 3594.944 kb on + strandat 3595.055 kb on + strandat 3595.055 kb on + strandat 3595.092 kb on + strandat 3595.109 kb on + strandat 3595.109 kb on + strandat 3595.109 kb on + strandat 3595.110 kb on - strandat 3595.110 kb on - strandat 3595.110 kb on - strandat 3595.129 kb on + strandat 3595.173 kb on - strandat 3595.175 kb on + strandat 3595.176 kb on - strandat 3595.184 kb on + strandat 3595.185 kb on - strandat 3595.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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3,592,327 - ECD_03417 0.55 -0.2
3,592,366 + ECD_03417 0.58 +0.5
3,592,367 - ECD_03417 0.58 +0.2
3,592,386 - ECD_03417 0.60 -0.4
3,592,568 + ECD_03417 0.73 -1.6
3,592,576 + ECD_03417 0.74 +0.5
3,592,577 - ECD_03417 0.74 -1.7
3,592,627 + ECD_03417 0.78 -0.6
3,592,641 + ECD_03417 0.79 +1.4
3,592,642 - ECD_03417 0.79 +0.9
3,592,642 - ECD_03417 0.79 +0.5
3,592,642 - ECD_03417 0.79 +0.1
3,592,642 - ECD_03417 0.79 +0.1
3,592,642 - ECD_03417 0.79 -0.2
3,592,642 - ECD_03417 0.79 -0.1
3,592,677 - ECD_03417 0.82 -0.4
3,592,745 + ECD_03417 0.87 -0.6
3,592,809 - +0.8
3,592,809 - +0.6
3,592,999 - +0.2
3,593,126 - -0.0
3,593,332 + -0.1
3,593,420 - ECD_03418 0.14 -0.0
3,593,573 - ECD_03418 0.29 +1.0
3,593,610 + ECD_03418 0.33 +0.9
3,593,729 + ECD_03418 0.45 +0.5
3,593,729 + ECD_03418 0.45 +0.6
3,593,755 - ECD_03418 0.47 -4.6
3,593,758 + ECD_03418 0.48 +0.6
3,593,808 - ECD_03418 0.53 -0.9
3,593,911 + ECD_03418 0.63 -1.1
3,593,928 + ECD_03418 0.65 -0.1
3,593,929 - ECD_03418 0.65 +0.4
3,593,929 - ECD_03418 0.65 +1.3
3,593,973 + ECD_03418 0.69 +0.5
3,594,034 + ECD_03418 0.75 +0.1
3,594,065 - ECD_03418 0.79 +0.3
3,594,074 + ECD_03418 0.79 +0.9
3,594,075 - ECD_03418 0.80 +0.0
3,594,075 - ECD_03418 0.80 +0.3
3,594,076 + ECD_03418 0.80 -0.1
3,594,076 + ECD_03418 0.80 -0.3
3,594,077 - ECD_03418 0.80 +0.4
3,594,082 + ECD_03418 0.80 +0.3
3,594,085 + ECD_03418 0.81 +0.4
3,594,085 + ECD_03418 0.81 +1.0
3,594,086 - ECD_03418 0.81 +1.1
3,594,086 - ECD_03418 0.81 -0.0
3,594,086 - ECD_03418 0.81 +0.2
3,594,100 + ECD_03418 0.82 +1.3
3,594,100 + ECD_03418 0.82 +0.4
3,594,155 - ECD_03418 0.88 -1.1
3,594,241 - +0.2
3,594,245 - +1.6
3,594,340 + +0.7
3,594,340 + -0.3
3,594,340 + -0.4
3,594,341 - -0.2
3,594,360 + +0.7
3,594,361 - -0.9
3,594,365 - -0.1
3,594,509 + -0.9
3,594,509 + +0.4
3,594,510 - +0.5
3,594,513 + -0.6
3,594,528 + -0.2
3,594,529 - -0.6
3,594,676 + -0.2
3,594,699 + +0.6
3,594,765 - +0.7
3,594,782 - -1.0
3,594,782 - -0.4
3,594,824 + +0.2
3,594,825 - -1.0
3,594,828 - -0.3
3,594,844 + +0.4
3,594,871 + -0.1
3,594,872 - -0.6
3,594,905 + +0.4
3,594,938 + +0.2
3,594,939 - +0.1
3,594,944 + +0.3
3,595,055 + -1.1
3,595,055 + +0.7
3,595,092 + +0.8
3,595,109 + +1.5
3,595,109 + +1.1
3,595,109 + +0.4
3,595,110 - +0.3
3,595,110 - +0.5
3,595,110 - -0.0
3,595,129 + +0.4
3,595,173 - -0.7
3,595,175 + +0.3
3,595,176 - +0.4
3,595,184 + +0.4
3,595,185 - -0.3
3,595,185 - -0.3

Or see this region's nucleotide sequence