Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03417 and ECD_03418 are separated by 365 nucleotides
ECD_03417: ECD_03417 - D-xylose isomerase, at 3,591,597 to 3,592,919
_03417
ECD_03418: ECD_03418 - D-xylose transporter subunit, at 3,593,285 to 3,594,277
_03418
Position (kb)
3593
3594
3595 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3592.327 kb on - strand, within ECD_03417 at 3592.366 kb on + strand, within ECD_03417 at 3592.367 kb on - strand, within ECD_03417 at 3592.386 kb on - strand, within ECD_03417 at 3592.568 kb on + strand, within ECD_03417 at 3592.576 kb on + strand, within ECD_03417 at 3592.577 kb on - strand, within ECD_03417 at 3592.627 kb on + strand, within ECD_03417 at 3592.641 kb on + strand, within ECD_03417 at 3592.642 kb on - strand, within ECD_03417 at 3592.642 kb on - strand, within ECD_03417 at 3592.642 kb on - strand, within ECD_03417 at 3592.642 kb on - strand, within ECD_03417 at 3592.642 kb on - strand, within ECD_03417 at 3592.642 kb on - strand, within ECD_03417 at 3592.677 kb on - strand, within ECD_03417 at 3592.745 kb on + strand, within ECD_03417 at 3592.809 kb on - strand at 3592.809 kb on - strand at 3592.999 kb on - strand at 3593.126 kb on - strand at 3593.332 kb on + strand at 3593.420 kb on - strand, within ECD_03418 at 3593.573 kb on - strand, within ECD_03418 at 3593.610 kb on + strand, within ECD_03418 at 3593.729 kb on + strand, within ECD_03418 at 3593.729 kb on + strand, within ECD_03418 at 3593.755 kb on - strand, within ECD_03418 at 3593.758 kb on + strand, within ECD_03418 at 3593.808 kb on - strand, within ECD_03418 at 3593.911 kb on + strand, within ECD_03418 at 3593.928 kb on + strand, within ECD_03418 at 3593.929 kb on - strand, within ECD_03418 at 3593.929 kb on - strand, within ECD_03418 at 3593.973 kb on + strand, within ECD_03418 at 3594.034 kb on + strand, within ECD_03418 at 3594.065 kb on - strand, within ECD_03418 at 3594.074 kb on + strand, within ECD_03418 at 3594.075 kb on - strand, within ECD_03418 at 3594.075 kb on - strand, within ECD_03418 at 3594.076 kb on + strand, within ECD_03418 at 3594.076 kb on + strand, within ECD_03418 at 3594.077 kb on - strand, within ECD_03418 at 3594.082 kb on + strand, within ECD_03418 at 3594.085 kb on + strand, within ECD_03418 at 3594.085 kb on + strand, within ECD_03418 at 3594.086 kb on - strand, within ECD_03418 at 3594.086 kb on - strand, within ECD_03418 at 3594.086 kb on - strand, within ECD_03418 at 3594.100 kb on + strand, within ECD_03418 at 3594.100 kb on + strand, within ECD_03418 at 3594.155 kb on - strand, within ECD_03418 at 3594.241 kb on - strand at 3594.245 kb on - strand at 3594.340 kb on + strand at 3594.340 kb on + strand at 3594.340 kb on + strand at 3594.341 kb on - strand at 3594.360 kb on + strand at 3594.361 kb on - strand at 3594.365 kb on - strand at 3594.509 kb on + strand at 3594.509 kb on + strand at 3594.510 kb on - strand at 3594.513 kb on + strand at 3594.528 kb on + strand at 3594.529 kb on - strand at 3594.676 kb on + strand at 3594.699 kb on + strand at 3594.765 kb on - strand at 3594.782 kb on - strand at 3594.782 kb on - strand at 3594.824 kb on + strand at 3594.825 kb on - strand at 3594.828 kb on - strand at 3594.844 kb on + strand at 3594.871 kb on + strand at 3594.872 kb on - strand at 3594.905 kb on + strand at 3594.938 kb on + strand at 3594.939 kb on - strand at 3594.944 kb on + strand at 3595.055 kb on + strand at 3595.055 kb on + strand at 3595.092 kb on + strand at 3595.109 kb on + strand at 3595.109 kb on + strand at 3595.109 kb on + strand at 3595.110 kb on - strand at 3595.110 kb on - strand at 3595.110 kb on - strand at 3595.129 kb on + strand at 3595.173 kb on - strand at 3595.175 kb on + strand at 3595.176 kb on - strand at 3595.184 kb on + strand at 3595.185 kb on - strand at 3595.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 3,592,327 - ECD_03417 0.55 -0.2 3,592,366 + ECD_03417 0.58 +0.5 3,592,367 - ECD_03417 0.58 +0.2 3,592,386 - ECD_03417 0.60 -0.4 3,592,568 + ECD_03417 0.73 -1.6 3,592,576 + ECD_03417 0.74 +0.5 3,592,577 - ECD_03417 0.74 -1.7 3,592,627 + ECD_03417 0.78 -0.6 3,592,641 + ECD_03417 0.79 +1.4 3,592,642 - ECD_03417 0.79 +0.9 3,592,642 - ECD_03417 0.79 +0.5 3,592,642 - ECD_03417 0.79 +0.1 3,592,642 - ECD_03417 0.79 +0.1 3,592,642 - ECD_03417 0.79 -0.2 3,592,642 - ECD_03417 0.79 -0.1 3,592,677 - ECD_03417 0.82 -0.4 3,592,745 + ECD_03417 0.87 -0.6 3,592,809 - +0.8 3,592,809 - +0.6 3,592,999 - +0.2 3,593,126 - -0.0 3,593,332 + -0.1 3,593,420 - ECD_03418 0.14 -0.0 3,593,573 - ECD_03418 0.29 +1.0 3,593,610 + ECD_03418 0.33 +0.9 3,593,729 + ECD_03418 0.45 +0.5 3,593,729 + ECD_03418 0.45 +0.6 3,593,755 - ECD_03418 0.47 -4.6 3,593,758 + ECD_03418 0.48 +0.6 3,593,808 - ECD_03418 0.53 -0.9 3,593,911 + ECD_03418 0.63 -1.1 3,593,928 + ECD_03418 0.65 -0.1 3,593,929 - ECD_03418 0.65 +0.4 3,593,929 - ECD_03418 0.65 +1.3 3,593,973 + ECD_03418 0.69 +0.5 3,594,034 + ECD_03418 0.75 +0.1 3,594,065 - ECD_03418 0.79 +0.3 3,594,074 + ECD_03418 0.79 +0.9 3,594,075 - ECD_03418 0.80 +0.0 3,594,075 - ECD_03418 0.80 +0.3 3,594,076 + ECD_03418 0.80 -0.1 3,594,076 + ECD_03418 0.80 -0.3 3,594,077 - ECD_03418 0.80 +0.4 3,594,082 + ECD_03418 0.80 +0.3 3,594,085 + ECD_03418 0.81 +0.4 3,594,085 + ECD_03418 0.81 +1.0 3,594,086 - ECD_03418 0.81 +1.1 3,594,086 - ECD_03418 0.81 -0.0 3,594,086 - ECD_03418 0.81 +0.2 3,594,100 + ECD_03418 0.82 +1.3 3,594,100 + ECD_03418 0.82 +0.4 3,594,155 - ECD_03418 0.88 -1.1 3,594,241 - +0.2 3,594,245 - +1.6 3,594,340 + +0.7 3,594,340 + -0.3 3,594,340 + -0.4 3,594,341 - -0.2 3,594,360 + +0.7 3,594,361 - -0.9 3,594,365 - -0.1 3,594,509 + -0.9 3,594,509 + +0.4 3,594,510 - +0.5 3,594,513 + -0.6 3,594,528 + -0.2 3,594,529 - -0.6 3,594,676 + -0.2 3,594,699 + +0.6 3,594,765 - +0.7 3,594,782 - -1.0 3,594,782 - -0.4 3,594,824 + +0.2 3,594,825 - -1.0 3,594,828 - -0.3 3,594,844 + +0.4 3,594,871 + -0.1 3,594,872 - -0.6 3,594,905 + +0.4 3,594,938 + +0.2 3,594,939 - +0.1 3,594,944 + +0.3 3,595,055 + -1.1 3,595,055 + +0.7 3,595,092 + +0.8 3,595,109 + +1.5 3,595,109 + +1.1 3,595,109 + +0.4 3,595,110 - +0.3 3,595,110 - +0.5 3,595,110 - -0.0 3,595,129 + +0.4 3,595,173 - -0.7 3,595,175 + +0.3 3,595,176 - +0.4 3,595,184 + +0.4 3,595,185 - -0.3 3,595,185 - -0.3
Or see this region's nucleotide sequence