Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02950 and ECD_02951 are separated by 44 nucleotides ECD_02951 and ECD_02952 overlap by 4 nucleotides ECD_02952 and ECD_02953 are separated by 283 nucleotides
ECD_02950: ECD_02950 - 2,4-dienoyl-CoA reductase, NADH and FMN-linked, at 3,097,747 to 3,099,765
_02950
ECD_02951: ECD_02951 - antitoxinof the HigB-HigA toxin-antitoxin system, at 3,099,810 to 3,100,226
_02951
ECD_02952: ECD_02952 - mRNA interferase toxin of the HigB-HigA toxin-antitoxin system, at 3,100,223 to 3,100,537
_02952
ECD_02953: ECD_02953 - 23S rRNA m(2)G1835 methyltransferase, SAM-dependent, at 3,100,821 to 3,101,957
_02953
Position (kb)
3099
3100
3101 Strain fitness (log2 ratio)
-2
-1
0
1 at 3098.965 kb on - strand, within ECD_02950 at 3098.985 kb on + strand, within ECD_02950 at 3099.022 kb on + strand, within ECD_02950 at 3099.037 kb on + strand, within ECD_02950 at 3099.041 kb on - strand, within ECD_02950 at 3099.196 kb on + strand, within ECD_02950 at 3099.207 kb on - strand, within ECD_02950 at 3099.284 kb on - strand, within ECD_02950 at 3099.284 kb on - strand, within ECD_02950 at 3099.284 kb on - strand, within ECD_02950 at 3099.287 kb on + strand, within ECD_02950 at 3099.288 kb on - strand, within ECD_02950 at 3099.334 kb on - strand, within ECD_02950 at 3099.360 kb on - strand, within ECD_02950 at 3099.360 kb on - strand, within ECD_02950 at 3099.530 kb on + strand, within ECD_02950 at 3099.531 kb on - strand, within ECD_02950 at 3099.531 kb on - strand, within ECD_02950 at 3099.590 kb on + strand at 3099.590 kb on + strand at 3099.593 kb on + strand at 3099.593 kb on + strand at 3099.593 kb on + strand at 3099.594 kb on - strand at 3099.683 kb on + strand at 3099.684 kb on - strand at 3099.764 kb on - strand at 3099.877 kb on - strand, within ECD_02951 at 3100.238 kb on - strand at 3100.267 kb on - strand, within ECD_02952 at 3100.292 kb on + strand, within ECD_02952 at 3100.292 kb on + strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.293 kb on - strand, within ECD_02952 at 3100.297 kb on - strand, within ECD_02952 at 3100.297 kb on - strand, within ECD_02952 at 3100.328 kb on + strand, within ECD_02952 at 3100.328 kb on + strand, within ECD_02952 at 3100.338 kb on - strand, within ECD_02952 at 3100.365 kb on + strand, within ECD_02952 at 3100.380 kb on + strand, within ECD_02952 at 3100.390 kb on + strand, within ECD_02952 at 3100.626 kb on + strand at 3100.657 kb on + strand at 3100.760 kb on - strand at 3100.868 kb on + strand at 3100.880 kb on + strand at 3100.880 kb on + strand at 3100.881 kb on - strand at 3100.921 kb on + strand at 3100.921 kb on + strand at 3100.922 kb on - strand at 3100.947 kb on - strand, within ECD_02953 at 3100.948 kb on + strand, within ECD_02953 at 3100.948 kb on + strand, within ECD_02953 at 3100.948 kb on + strand, within ECD_02953 at 3100.948 kb on + strand, within ECD_02953 at 3100.949 kb on - strand, within ECD_02953 at 3101.103 kb on - strand, within ECD_02953
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 3,098,965 - ECD_02950 0.60 +0.5 3,098,985 + ECD_02950 0.61 -1.3 3,099,022 + ECD_02950 0.63 +0.7 3,099,037 + ECD_02950 0.64 +0.2 3,099,041 - ECD_02950 0.64 +0.8 3,099,196 + ECD_02950 0.72 -0.3 3,099,207 - ECD_02950 0.72 -1.0 3,099,284 - ECD_02950 0.76 +0.6 3,099,284 - ECD_02950 0.76 -0.3 3,099,284 - ECD_02950 0.76 +0.5 3,099,287 + ECD_02950 0.76 -1.5 3,099,288 - ECD_02950 0.76 +0.5 3,099,334 - ECD_02950 0.79 -0.7 3,099,360 - ECD_02950 0.80 -0.1 3,099,360 - ECD_02950 0.80 +0.3 3,099,530 + ECD_02950 0.88 -1.1 3,099,531 - ECD_02950 0.88 -0.6 3,099,531 - ECD_02950 0.88 -0.2 3,099,590 + -1.3 3,099,590 + -0.6 3,099,593 + -1.0 3,099,593 + -0.1 3,099,593 + +0.1 3,099,594 - -0.0 3,099,683 + -0.7 3,099,684 - +0.3 3,099,764 - -0.8 3,099,877 - ECD_02951 0.16 +0.9 3,100,238 - -1.7 3,100,267 - ECD_02952 0.14 -0.4 3,100,292 + ECD_02952 0.22 -0.1 3,100,292 + ECD_02952 0.22 +0.1 3,100,293 - ECD_02952 0.22 +0.2 3,100,293 - ECD_02952 0.22 +0.4 3,100,293 - ECD_02952 0.22 -0.0 3,100,293 - ECD_02952 0.22 -1.1 3,100,293 - ECD_02952 0.22 -0.5 3,100,293 - ECD_02952 0.22 -0.5 3,100,293 - ECD_02952 0.22 +0.7 3,100,293 - ECD_02952 0.22 +0.5 3,100,297 - ECD_02952 0.23 +0.3 3,100,297 - ECD_02952 0.23 +1.5 3,100,328 + ECD_02952 0.33 +0.9 3,100,328 + ECD_02952 0.33 -0.9 3,100,338 - ECD_02952 0.37 -0.4 3,100,365 + ECD_02952 0.45 +0.2 3,100,380 + ECD_02952 0.50 -0.5 3,100,390 + ECD_02952 0.53 +0.3 3,100,626 + -2.5 3,100,657 + +0.1 3,100,760 - -0.5 3,100,868 + -0.2 3,100,880 + +0.6 3,100,880 + +0.3 3,100,881 - +0.2 3,100,921 + +0.1 3,100,921 + -0.0 3,100,922 - +0.3 3,100,947 - ECD_02953 0.11 +0.9 3,100,948 + ECD_02953 0.11 +0.4 3,100,948 + ECD_02953 0.11 -0.1 3,100,948 + ECD_02953 0.11 -1.2 3,100,948 + ECD_02953 0.11 +0.4 3,100,949 - ECD_02953 0.11 +0.7 3,101,103 - ECD_02953 0.25 -0.2
Or see this region's nucleotide sequence