Strain Fitness in Escherichia coli BL21 around ECD_01485

Experiment: Bas29

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01484 and ECD_01485 are separated by 149 nucleotidesECD_01485 and ECD_01486 are separated by 24 nucleotidesECD_01486 and ECD_01487 are separated by 120 nucleotides ECD_01484: ECD_01484 - uncharacterized protein, at 1,564,336 to 1,565,451 _01484 ECD_01485: ECD_01485 - arabinose efflux transporter, arabinose-inducible, at 1,565,601 to 1,566,791 _01485 ECD_01486: ECD_01486 - UPF0056 family inner membrane protein, at 1,566,816 to 1,567,481 _01486 ECD_01487: ECD_01487 - phage N15 gp48-like protein, at 1,567,602 to 1,567,886 _01487 Position (kb) 1565 1566 1567Strain fitness (log2 ratio) -2 -1 0 1at 1566.291 kb on + strand, within ECD_01485at 1566.939 kb on - strand, within ECD_01486at 1567.065 kb on - strand, within ECD_01486at 1567.334 kb on - strand, within ECD_01486at 1567.429 kb on - strandat 1567.510 kb on + strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.620 kb on - strandat 1567.646 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.654 kb on - strand, within ECD_01487at 1567.662 kb on - strand, within ECD_01487at 1567.678 kb on - strand, within ECD_01487at 1567.678 kb on - strand, within ECD_01487

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas29
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1,566,291 + ECD_01485 0.58 -0.2
1,566,939 - ECD_01486 0.18 +0.7
1,567,065 - ECD_01486 0.37 -1.3
1,567,334 - ECD_01486 0.78 +0.4
1,567,429 - +0.2
1,567,510 + -0.5
1,567,620 - +0.9
1,567,620 - +0.0
1,567,620 - -0.1
1,567,620 - -0.7
1,567,646 - ECD_01487 0.15 +0.4
1,567,654 - ECD_01487 0.18 +0.2
1,567,654 - ECD_01487 0.18 -0.8
1,567,654 - ECD_01487 0.18 +1.0
1,567,662 - ECD_01487 0.21 -1.8
1,567,678 - ECD_01487 0.27 -0.2
1,567,678 - ECD_01487 0.27 +0.5

Or see this region's nucleotide sequence