Experiment: Bas29
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00812 and ECD_00813 are separated by 83 nucleotides ECD_00813 and ECD_00814 are separated by 179 nucleotides ECD_00814 and ECD_00815 are separated by 108 nucleotides
ECD_00812: ECD_00812 - putative drug efflux MFS transporter, inner membrane protein, at 870,050 to 871,258
_00812
ECD_00813: ECD_00813 - transcriptional regulator of csgD and ybiJI; autoregulator, at 871,342 to 871,878
_00813
ECD_00814: ECD_00814 - hypothetical protein, at 872,058 to 872,390
_00814
ECD_00815: ECD_00815 - integrase for prophage, at 872,499 to 873,443
_00815
Position (kb) 871
872 Strain fitness (log2 ratio) -1
0
1
2 at 870.537 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.709 kb on - strand, within ECD_00812 at 870.713 kb on - strand, within ECD_00812 at 870.721 kb on + strand, within ECD_00812 at 870.741 kb on - strand, within ECD_00812 at 870.977 kb on + strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 870.978 kb on - strand, within ECD_00812 at 871.027 kb on + strand, within ECD_00812 at 871.027 kb on + strand, within ECD_00812 at 871.027 kb on + strand, within ECD_00812 at 871.028 kb on - strand, within ECD_00812 at 871.028 kb on - strand, within ECD_00812 at 871.205 kb on - strand at 871.237 kb on + strand at 871.238 kb on - strand at 871.258 kb on + strand at 871.552 kb on + strand, within ECD_00813 at 871.661 kb on - strand, within ECD_00813 at 871.915 kb on - strand at 872.083 kb on - strand at 872.101 kb on - strand, within ECD_00814 at 872.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas29 remove 870,537 - ECD_00812 0.40 -0.6 870,709 - ECD_00812 0.55 +0.0 870,709 - ECD_00812 0.55 +0.5 870,709 - ECD_00812 0.55 +0.1 870,709 - ECD_00812 0.55 +0.8 870,713 - ECD_00812 0.55 -0.5 870,721 + ECD_00812 0.56 +0.1 870,741 - ECD_00812 0.57 +0.3 870,977 + ECD_00812 0.77 -0.6 870,978 - ECD_00812 0.77 -0.0 870,978 - ECD_00812 0.77 -0.8 870,978 - ECD_00812 0.77 +0.1 870,978 - ECD_00812 0.77 -0.8 871,027 + ECD_00812 0.81 -0.4 871,027 + ECD_00812 0.81 +0.4 871,027 + ECD_00812 0.81 -1.5 871,028 - ECD_00812 0.81 +0.1 871,028 - ECD_00812 0.81 +0.4 871,205 - +0.4 871,237 + +0.9 871,238 - +0.7 871,258 + +0.2 871,552 + ECD_00813 0.39 +0.2 871,661 - ECD_00813 0.59 +2.0 871,915 - +1.2 872,083 - -0.5 872,101 - ECD_00814 0.13 +0.6 872,424 + +0.1
Or see this region's nucleotide sequence